Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_B12
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    25   2.7  
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.1  

>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 25.0 bits (52), Expect(2) = 2.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 707 PPPPPPXXXXXFFFXXK 757
           PPPPPP     F F  K
Sbjct: 576 PPPPPPPPPPSFMFNGK 592



 Score = 23.0 bits (47), Expect(2) = 2.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 683 PXXGGXXFPPPPPP 724
           P   G   PPPPPP
Sbjct: 530 PLSTGAPTPPPPPP 543


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 680 PPXXGGXXFPPPPPP 724
           PP  GG   PPPPPP
Sbjct: 45  PPCGGGYEAPPPPPP 59


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 628 GXPPXXPX*KXKKKXPXXPPXWGXXFSPPPPP 723
           G PP  P        P  PP  G    PPPPP
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 628 GXPPXXPX*KXKKKXPXXPPXWGXXFSPPPPP 723
           G PP  P        P  PP  G    PPPPP
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 628 GXPPXXPX*KXKKKXPXXPPXWGXXFSPPPPP 723
           G PP  P        P  PP  G    PPPPP
Sbjct: 340 GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,625,041
Number of Sequences: 27780
Number of extensions: 155141
Number of successful extensions: 1316
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)