Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_B08
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   163   3e-41
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   5.9  
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.8  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   7.8  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  163 bits (396), Expect = 3e-41
 Identities = 85/205 (41%), Positives = 107/205 (52%), Gaps = 1/205 (0%)
 Frame = +1

Query: 211 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 390
           TT +G P+    A   VGK GP LLQD + +D    FDRERIPERVVHAKG+GAFG FE 
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFEC 72

Query: 391 THDITKYSAAKVFESIGKRTPIAVRFXXXXXXXXXADTVRXPRGFAVKFYTDDGVXDLXG 570
           T DITKY+   +F  +GK+TP+  RF          DT R PRGFA+KFYTD+G+ D+ G
Sbjct: 73  TDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDEGIFDMVG 132

Query: 571 NNTPIFFFXKSTFXPXFYPYSXKKPCNKX*XSKXXXGTFDXXTXKPPSXXLLFWXTGXS* 750
           NNTP+FF       P F     + P N    +                  +LF   G + 
Sbjct: 133 NNTPVFFLRDPAKFPLFIHTQKRNPQNDMKDATMFWDYLSQNAESIHQVMILFSDLGGTP 192

Query: 751 WLXNF-NGFGSQNSTLEFPKGXGYW 822
           +   F +GF S        KG  Y+
Sbjct: 193 YSYRFMDGFSSHTYKFVNDKGEFYY 217


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 517 EXHEQYQQIHXFHQXLRI*QQSVSFCL-WTQILWQHCTW 404
           E +E+Y+Q+            SV + + W Q+L+  CTW
Sbjct: 282 ENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 304 DEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESI 438
           ++++ F  E  P+ V+ A GAG  G  E T  +    A KV++++
Sbjct: 59  NDIAQFLAEIHPDVVIFAAGAGGKGGPERTRAVDYEGAIKVYDAM 103


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 470 ENLTAIGVLLPMDSNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDDIS 306
           + +  I  L    SNT A      S V + Y K+P  +A T R  I+S +K  IS
Sbjct: 294 DTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRL-IKSAAKWSIS 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,987
Number of Sequences: 5004
Number of extensions: 59094
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)