Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_B08
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 145 3e-35
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 141 6e-34
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 138 5e-33
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 30 2.0
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767... 28 8.3
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 8.3
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 28 8.3
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 145 bits (352), Expect = 3e-35
Identities = 68/129 (52%), Positives = 88/129 (68%)
Frame = +1
Query: 205 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYF 384
F TT SGAPV + TVG+ GP LL+D + +++++ FDRERIPERVVHA+GA A G+F
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFF 75
Query: 385 EVTHDITKYSAAKVFESIGKRTPIAVRFXXXXXXXXXADTVRXPRGFAVKFYTDDGVXDL 564
EVTHDI+ + A + G +TP+ VRF +T+R PRGFAVKFYT +G DL
Sbjct: 76 EVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDL 135
Query: 565 XGNNTPIFF 591
GNN P+FF
Sbjct: 136 VGNNMPVFF 144
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 141 bits (342), Expect = 6e-34
Identities = 66/127 (51%), Positives = 86/127 (67%)
Frame = +1
Query: 211 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 390
+T SGAPV TVG GP LL+D + ++++++FDRERIPERVVHA+GA A G+FEV
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEV 77
Query: 391 THDITKYSAAKVFESIGKRTPIAVRFXXXXXXXXXADTVRXPRGFAVKFYTDDGVXDLXG 570
THDIT + A + G +TP+ VRF +T+R PRGFA+KFYT +G DL G
Sbjct: 78 THDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTREGNWDLVG 137
Query: 571 NNTPIFF 591
NN P+FF
Sbjct: 138 NNFPVFF 144
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 138 bits (334), Expect = 5e-33
Identities = 65/127 (51%), Positives = 83/127 (65%)
Frame = +1
Query: 211 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 390
TT +GAPV TVG GP LL+D + +++++ F RERIPERVVHA+GA A G+FE
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFEC 89
Query: 391 THDITKYSAAKVFESIGKRTPIAVRFXXXXXXXXXADTVRXPRGFAVKFYTDDGVXDLXG 570
THD+T + A S G +TP+ VRF +T+R PRGFAVKFYT +G DL G
Sbjct: 90 THDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLG 149
Query: 571 NNTPIFF 591
NN P+FF
Sbjct: 150 NNFPVFF 156
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 250 IQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVF 429
++ +GK+ AL +D NF + SS D R+ E KG YF + + + A++
Sbjct: 32 MEKLGKDQDAL-EDANFQQKPSSVDLNRLMELANSEKGVSQMQYFVKHWEYKRANTARLL 90
Query: 430 -ESIG 441
E IG
Sbjct: 91 KEQIG 95
>04_03_0554 -
17075142-17075159,17075788-17076591,17076619-17076719,
17077095-17077751,17077827-17078768,17078837-17078896,
17079131-17079763,17079886-17079942,17080177-17080702
Length = 1265
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 577 YYFQXNPTLHHQYRTLQQTLEXHEQYQQI 491
Y++ +P+L H+YR +Q E +EQ Q++
Sbjct: 580 YFYDDDPSLEHRYRRCRQ--ELYEQDQEV 606
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 302 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 192
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 577 YYFQXNPTLHHQYRTLQQTLEXHEQYQQI 491
Y++ +PTL H+YR + L +EQ QQ+
Sbjct: 363 YFYDDDPTLEHRYRRCRPDL--YEQDQQV 389
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,697,191
Number of Sequences: 37544
Number of extensions: 388548
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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