Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_B07
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   347   9e-97
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   335   4e-93
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   2.7  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   3.5  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   6.1  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   8.1  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   8.1  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  347 bits (854), Expect = 9e-97
 Identities = 175/241 (72%), Positives = 200/241 (82%)
 Frame = +2

Query: 137 STMSERXANVXXAKLAEQAERYDXMVEAXKHVASRNVSDNELTVEERNLLSVAYKNVIGA 316
           ST S   A V  AKLAEQAERY+ MVE  K VAS   +D ELTVEERNLLSVAYKNVIGA
Sbjct: 2   STTSREDA-VYLAKLAEQAERYEGMVENMKSVAS---TDQELTVEERNLLSVAYKNVIGA 57

Query: 317 RRASWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTG 496
           RRASWRI+SSIEQKEE+KG   ++ +I+ YR ++E+EL  IC DIL VL+K+LIP++ + 
Sbjct: 58  RRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASA 117

Query: 497 ESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELAPXHPIRLGLAL 676
           ESKVFYYKMKGDY+RYLAEFA G  R+ +A+ SL  YKAAS+IA  ELAP HPIRLGLAL
Sbjct: 118 ESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLAL 177

Query: 677 NFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSXESYKDSTLIMQLLRDNLTLWTSDM 856
           NFSVFYYEILNSPDRAC LAK AFD+AI+ELD+LS ESYKDSTLIMQLLRDNLTLWTSD 
Sbjct: 178 NFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDA 237

Query: 857 Q 859
           +
Sbjct: 238 E 238


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  335 bits (824), Expect = 4e-93
 Identities = 166/238 (69%), Positives = 196/238 (82%)
 Frame = +2

Query: 146 SERXANVXXAKLAEQAERYDXMVEAXKHVASRNVSDNELTVEERNLLSVAYKNVIGARRA 325
           + R  +V  AKLAEQAERY+ MVE  K VA  N   ++L+VEERNLLSVAYKN+IGARRA
Sbjct: 3   NSRENSVYLAKLAEQAERYEEMVENMKKVACSN---DKLSVEERNLLSVAYKNIIGARRA 59

Query: 326 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESK 505
           SWRIISSIEQKEE++G   +  +I+ YR ++E EL DIC D+L VL+K+LIP++ TGESK
Sbjct: 60  SWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESK 119

Query: 506 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELAPXHPIRLGLALNFS 685
           VFYYKMKGDY+RYLAEF  G   KEAA++SL AYKAASDIA+ EL P  P+RLGLALNFS
Sbjct: 120 VFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFS 179

Query: 686 VFYYEILNSPDRACRLAKAAFDDAIAELDTLSXESYKDSTLIMQLLRDNLTLWTSDMQ 859
           VFYYEIL+SP+ AC LAK  FD+AI+ELD+LS ESYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 180 VFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 23/100 (23%), Positives = 45/100 (45%)
 Frame = +2

Query: 134 SSTMSERXANVXXAKLAEQAERYDXMVEAXKHVASRNVSDNELTVEERNLLSVAYKNVIG 313
           SST S   +N    ++  Q+E Y  + +     +  ++SD E  +E R    V  +N + 
Sbjct: 45  SSTRSSPASNQQNLEIVSQSEAYHKISDLDDSTSIFSISDQENILERRISEEVVRENSV- 103

Query: 314 ARRASWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELR 433
              +S   +SS     ET+ + + L     + S  +K+++
Sbjct: 104 ---SSIENVSSSAVARETQSSANILVKDNHFFSHKQKKIQ 140


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 501 DSPVCELGMRYLSRTPRMSEQMSRSSFSTW 412
           DSP   +G R +S+  R  +   RSS S+W
Sbjct: 481 DSPTKVIGKRNVSKASRTGQGRKRSSRSSW 510


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 389 NMIRAYRSQVEKELRDICSDILGVLDK 469
           N +RA + +++K+L+D+  +   +LDK
Sbjct: 243 NQLRADKKKLKKDLKDLVEEFQPILDK 269


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 456 PRMSEQMSRSSFSTWLRYALIMFNLSSAPFVSSFCSM 346
           P ++E  + +S S+W+  A ++ + +  P V  FC++
Sbjct: 121 PTIAEDFNDTSSSSWIGSAYVLASNAVLPAVGVFCNI 157


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -2

Query: 672 ASPRRMGWXGASSVMAMSEAALYATSEFSAASLRSL-PVANSARYRW*SPFIL**KTFDS 496
           +S   +GW    S  +MS++     + ++    RSL    N   Y W SPF     TF+ 
Sbjct: 244 SSDLHLGWDHTVSKESMSQSIAEVLNPYNKGVSRSLNDATNMETYHW-SPFPPQFSTFND 302

Query: 495 PVCELGMRY 469
               L + Y
Sbjct: 303 NALRLRIYY 311


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 419 EKELRDICSDILGVLDKYLIPSSQTGESKVFYY 517
           E+ELRD+     G+   YL    +TG +K F +
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,826
Number of Sequences: 5004
Number of extensions: 42517
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)