Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_B06
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -3

Query: 738 PPPXXXXXXPPPPXPXXXXXXPGAXAPSTP 649
           PPP      PPPP P       G   P  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -3

Query: 738  PPPXXXXXXPPPPXPXXXXXXPGAXAPSTP 649
            PPP      PPP  P      P A  P  P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 23.0 bits (47), Expect(2) = 4.1
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -3

Query: 738  PPPXXXXXXPPPPXPXXXXXXPGAXAPSTP 649
            PPP      P  P        P + APS P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 21.8 bits (44), Expect(2) = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 861  PLPXXXFPPPPXXPXM 814
            P P    PPPP  P M
Sbjct: 1708 PPPPMSVPPPPSAPPM 1723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,799
Number of Sequences: 5004
Number of extensions: 12956
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)