Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_B06
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   1.9  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    26   3.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   7.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   7.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   7.5  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/78 (25%), Positives = 20/78 (25%), Gaps = 1/78 (1%)
 Frame = -3

Query: 738 PPPXXX-XXXPPPPXPXXXXXXPGAXAPSTPXVLXXFXXXXXXXXXVXSPXXXXXXXXXP 562
           PPP       PPPP P      PG      P     F            P         P
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348

Query: 561 PXPXATXXXXAPXXPPPP 508
           P P        P   PPP
Sbjct: 349 PPPPPRYPSAGPGMYPPP 366


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/78 (25%), Positives = 20/78 (25%), Gaps = 1/78 (1%)
 Frame = -3

Query: 738 PPPXXX-XXXPPPPXPXXXXXXPGAXAPSTPXVLXXFXXXXXXXXXVXSPXXXXXXXXXP 562
           PPP       PPPP P      PG      P     F            P         P
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358

Query: 561 PXPXATXXXXAPXXPPPP 508
           P P        P   PPP
Sbjct: 359 PPPPPRYPSAGPGMYPPP 376


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 738 PPPXXXXXXPPPPXPXXXXXXPGAXAPSTP 649
           PPP      PPPP P      P    P TP
Sbjct: 106 PPPPMFGAPPPPPPPSGLGVAPQPPRPKTP 135


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 26.2 bits (55), Expect(2) = 3.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 738 PPPXXXXXXPPPPXPXXXXXXPGAXAPSTPXVL 640
           PPP      PPPP P      P    PS P ++
Sbjct: 66  PPPPICPPPPPPPMPCPPPPPP-MPRPSCPCMM 97



 Score = 21.8 bits (44), Expect(2) = 3.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 861 PLPXXXFPPPPXXP 820
           P+P    PPPP  P
Sbjct: 48  PMPMPVCPPPPPCP 61


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/69 (24%), Positives = 17/69 (24%)
 Frame = -3

Query: 855 PXXXFPPPPXXPXMXXFXXXXXXXXXXXXXXXXXXPXXAPPPXXXXXXPPPPXPXXXXXX 676
           P    PPPP  P                           PPP      PPPP P      
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780

Query: 675 PGAXAPSTP 649
            G   P  P
Sbjct: 781 KGGPPPPPP 789


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/69 (24%), Positives = 17/69 (24%)
 Frame = -3

Query: 855 PXXXFPPPPXXPXMXXFXXXXXXXXXXXXXXXXXXPXXAPPPXXXXXXPPPPXPXXXXXX 676
           P    PPPP  P                           PPP      PPPP P      
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780

Query: 675 PGAXAPSTP 649
            G   P  P
Sbjct: 781 KGGPPPPPP 789


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/69 (24%), Positives = 17/69 (24%)
 Frame = -3

Query: 855 PXXXFPPPPXXPXMXXFXXXXXXXXXXXXXXXXXXPXXAPPPXXXXXXPPPPXPXXXXXX 676
           P    PPPP  P                           PPP      PPPP P      
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 363

Query: 675 PGAXAPSTP 649
            G   P  P
Sbjct: 364 KGGPPPPPP 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,477,511
Number of Sequences: 27780
Number of extensions: 145409
Number of successful extensions: 1581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)