Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_B05
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    28   2.1  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    27   3.6  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    27   3.6  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     26   6.3  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   8.3  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   8.3  

>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 707 LTFALSRTLKNSH*AYRLRIQIWRAIASTKIW 802
           +T +LS+ +K    A R ++ +W   ++TKIW
Sbjct: 248 VTRSLSKNIKGDGDAVRAQLWLWNRQSNTKIW 279


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 53  LKT*RRVKASFSYCNSKDTIE 115
           LKT  +V A+ +YC  KDTI+
Sbjct: 88  LKTNLQVNAAITYCKDKDTID 108


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 770 FEYAICMLSASFLTFSITQKLT 705
           F    C++S SFLTF++  KLT
Sbjct: 488 FMLGTCIVSVSFLTFTVYAKLT 509


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 730 VKKLALSIQIAYSNLARNRFDKNLGLSFNSF 822
           VK   LS+ +AY  L++N  ++ L  S N+F
Sbjct: 459 VKDTLLSLDMAYKALSQNNLNEALSYSNNAF 489


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 677 VNIITLYKFKLTFALSRTLKNSH*AYRLRIQIWRAIASTKIWG 805
           +N  +LYK  ++F LS  + N    YR   Q W  +   + +G
Sbjct: 244 LNEFSLYKTNISFYLSNFIVNGVLQYRKEFQRWLRLYEFRRFG 286


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 183 LVNVLASEPTQRTTK-AKIINFCISIVSFEL 94
           L N L++   +  TK AK++NFCI I  F +
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLFNV 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,720
Number of Sequences: 5004
Number of extensions: 56590
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)