Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_B04
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0005 + 11568545-11569119,11569179-11569191                       31   1.2  
02_01_0062 - 448105-448145,448780-448866,449664-449790                 30   2.0  
09_02_0495 + 9880714-9881196                                           29   4.7  
07_01_0479 + 3606663-3607448                                           29   4.7  
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544...    28   6.2  
02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108           28   6.2  
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529...    28   8.2  

>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
 Frame = -3

Query: 515 PPXXKXGGXKXXXXGGGXXXXXXPPKKXFXXXGGXXXXGGG----PPPPPXXXFXP 360
           PP    GG      GGG      P        GG    GGG    P PPP   F P
Sbjct: 93  PPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLP 148


>02_01_0062 - 448105-448145,448780-448866,449664-449790
          Length = 84

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 389 PPPPXXXFXPPXFLTPQXXGGAP 321
           PPPP   F PP +  P   GG P
Sbjct: 18  PPPPPPPFFPPQWAPPVPGGGGP 40


>09_02_0495 + 9880714-9881196
          Length = 160

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +1

Query: 358 GGKXXXXGGGGGPPPXXXXPPKXXXXFXGGXXXXXXPPP 474
           GG     GG   PPP    P      F GG      PPP
Sbjct: 69  GGAGGLFGGTYPPPPPGVMPGAFAPPFGGGFPYGPAPPP 107


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -3

Query: 401 GGGPPPPPXXXFXPPXFLTPQXXGGAPXXXP 309
           GG PPPP      PP    PQ   G P   P
Sbjct: 199 GGPPPPPGPFMRGPPPMGPPQVRPGMPGGPP 229


>04_04_0137 -
           23053148-23053798,23053911-23054146,23054268-23054458,
           23054587-23056010
          Length = 833

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = -3

Query: 392 PPPPPXXXFXPPXFLTP-QXXGGAPXXXP 309
           PPPPP     PP  L P Q   G P   P
Sbjct: 395 PPPPPPTPPPPPPLLAPKQQSSGGPILPP 423


>02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108
          Length = 139

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 392 PPPPPXXXFXPPXFLTPQXXGGAP 321
           PPPPP   F PP +  P   GG P
Sbjct: 36  PPPPPP--FFPPQWAPPVAGGGGP 57


>03_06_0758 -
           36052261-36052301,36052463-36052697,36052895-36052966,
           36056477-36056567,36056650-36056872,36056964-36057300,
           36057406-36057588
          Length = 393

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 392 PPPPPXXXFXPPXFLTP 342
           PPPPP     PP FL P
Sbjct: 144 PPPPPPMAVAPPPFLPP 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,437,656
Number of Sequences: 37544
Number of extensions: 384119
Number of successful extensions: 1654
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)