Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_B04
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 1.8
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 30 1.8
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 24 2.2
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 24 2.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 2.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 2.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 2.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 2.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 2.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 2.4
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 25 2.8
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 25 2.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 25 3.6
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 28 5.6
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 28 5.6
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 27 9.8
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 27 9.8
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 27 9.8
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 27 9.8
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 27 9.8
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = -3
Query: 515 PPXXKXGGXKXXXXGGGXXXXXXPPKKXFXXXGGXXXXGGGPPPPPXXXFXPPXFLTPQX 336
PP G G PP F G GG PPPP P + PQ
Sbjct: 369 PPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQG 428
Query: 335 XGG 327
G
Sbjct: 429 GPG 431
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -3
Query: 419 GGXXXXGGGPPPPPXXXFXPPXFLTPQXXGGAP 321
GG G G PPPP PP P GGAP
Sbjct: 24 GGGGGCGCGAPPPPPACAPPP---APACGGGAP 53
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = -3
Query: 473 GGGXXXXXXPPKKXFXXXGGXXXXGGGPPPPPXXXFXPPXFLTPQXXGGA 324
GGG PP GGG PPPP P + P GGA
Sbjct: 25 GGGGCGCGAPPPPPACAPPPAPACGGGAPPPPAYAAPAPSYGAP--AGGA 72
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 443 GGXXXXFXPPXXXXFXPPPFXXXGGXPPPP 532
GG PP PPP GG PPP
Sbjct: 26 GGGCGCGAPPPPPACAPPPAPACGGGAPPP 55
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 24.2 bits (50), Expect(2) = 2.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 358 GGKXXXXGGGGGPP 399
GG GGGGGPP
Sbjct: 615 GGGPGGPGGGGGPP 628
Score = 23.8 bits (49), Expect(2) = 2.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 379 GGGGGPPPXXXXPPK 423
GGGGG P PPK
Sbjct: 633 GGGGGGPTGPPAPPK 647
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 24.2 bits (50), Expect(2) = 2.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 358 GGKXXXXGGGGGPP 399
GG GGGGGPP
Sbjct: 615 GGGPGGPGGGGGPP 628
Score = 23.8 bits (49), Expect(2) = 2.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 379 GGGGGPPPXXXXPPK 423
GGGGG P PPK
Sbjct: 633 GGGGGGPTGPPAPPK 647
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = -3
Query: 419 GGXXXXGGGPPPPPXXXFXPPXFLTPQXXGGAPXXXP 309
GG GGPPPPP PP L P GG P P
Sbjct: 733 GGLPPITGGPPPPP-----PPGGL-PPISGGPPPPPP 763
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = +3
Query: 321 GGPPPXLGG*KXGGXKXXXGGGGXXPPXXXGPPXXXKXFFXGGXXXXXPPPXXXXFXPP 497
GGPPP GG GG PP G P GG PPP P
Sbjct: 740 GGPPPPP---PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Frame = -3
Query: 497 GGXKXXXXGGGXXXXXXPPKKXFXXXGGXXXXGGGPPPPPXXXFXPPXFLTPQXXG--GA 324
GG GG P G GG PPPPP PP P G G
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 323 PXXXP 309
P P
Sbjct: 784 PPPPP 788
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Frame = +2
Query: 380 GGGXXPPPXXXXPXKXXXFFXGGXXXXFXPPXXXXFXPPP---FXXXGGXPPPP 532
GG PPP P GG PP PPP GG PPPP
Sbjct: 740 GGPPPPPPPGGLPP-----ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = -3
Query: 419 GGXXXXGGGPPPPPXXXFXPPXFLTPQXXGGAPXXXP 309
GG GGPPPPP PP L P GG P P
Sbjct: 733 GGLPPITGGPPPPP-----PPGGL-PPISGGPPPPPP 763
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = +3
Query: 321 GGPPPXLGG*KXGGXKXXXGGGGXXPPXXXGPPXXXKXFFXGGXXXXXPPPXXXXFXPP 497
GGPPP GG GG PP G P GG PPP P
Sbjct: 740 GGPPPPP---PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Frame = -3
Query: 497 GGXKXXXXGGGXXXXXXPPKKXFXXXGGXXXXGGGPPPPPXXXFXPPXFLTPQXXG--GA 324
GG GG P G GG PPPPP PP P G G
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 323 PXXXP 309
P P
Sbjct: 784 PPPPP 788
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Frame = +2
Query: 380 GGGXXPPPXXXXPXKXXXFFXGGXXXXFXPPXXXXFXPPP---FXXXGGXPPPP 532
GG PPP P GG PP PPP GG PPPP
Sbjct: 740 GGPPPPPPPGGLPP-----ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = -3
Query: 419 GGXXXXGGGPPPPPXXXFXPPXFLTPQXXGGAPXXXP 309
GG GGPPPPP PP L P GG P P
Sbjct: 316 GGLPPITGGPPPPP-----PPGGL-PPISGGPPPPPP 346
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = +3
Query: 321 GGPPPXLGG*KXGGXKXXXGGGGXXPPXXXGPPXXXKXFFXGGXXXXXPPPXXXXFXPP 497
GGPPP GG GG PP G P GG PPP P
Sbjct: 323 GGPPPPP---PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Frame = -3
Query: 497 GGXKXXXXGGGXXXXXXPPKKXFXXXGGXXXXGGGPPPPPXXXFXPPXFLTPQXXG--GA 324
GG GG P G GG PPPPP PP P G G
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Query: 323 PXXXP 309
P P
Sbjct: 367 PPPPP 371
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Frame = +2
Query: 380 GGGXXPPPXXXXPXKXXXFFXGGXXXXFXPPXXXXFXPPP---FXXXGGXPPPP 532
GG PPP P GG PP PPP GG PPPP
Sbjct: 323 GGPPPPPPPGGLPP-----ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 401 GGGPPPPPXXXFXPPXFLTPQXXGGAP 321
G PPPPP P L P GG+P
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSP 321
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 401 GGGPPPPPXXXFXPPXFLTPQXXGGAP 321
G PPPPP P L P GG+P
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSP 342
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 401 GGGPPPPPXXXFXPPXFLTPQXXGGAP 321
G PPPPP P L P GG+P
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSP 327
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 24.6 bits (51), Expect(2) = 2.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 395 GPPPPPXXXFXPPXFLTPQ 339
G PPPP + PP PQ
Sbjct: 691 GGPPPPGQPYGPPGGYPPQ 709
Score = 23.0 bits (47), Expect(2) = 2.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 416 GXXXXGGGPPPPP 378
G G GPPPPP
Sbjct: 672 GPPGGGQGPPPPP 684
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 24.6 bits (51), Expect(2) = 2.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 395 GPPPPPXXXFXPPXFLTPQ 339
G PPPP + PP PQ
Sbjct: 691 GGPPPPGQPYGPPGGYPPQ 709
Score = 23.0 bits (47), Expect(2) = 2.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 416 GXXXXGGGPPPPP 378
G G GPPPPP
Sbjct: 672 GPPGGGQGPPPPP 684
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +2
Query: 383 GGXXPPPXXXXPXKXXXFFXGGXXXXFXPPXXXXFXPPPFXXXGGXPPPP 532
G PPP F GG PP PPP G PPPP
Sbjct: 72 GFIPPPPGPGGIPPPPPMFAGGIPP---PPPMMGGIPPPPPMFGAPPPPP 118
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 467 PPXXXXFXPPPFXXXGGXPPPP 532
PP F PPP GG PPPP
Sbjct: 67 PPVPNGFIPPP-PGPGGIPPPP 87
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/74 (35%), Positives = 27/74 (36%)
Frame = -3
Query: 401 GGGPPPPPXXXFXPPXFLTPQXXGGAPXXXPXXXXXXXXXXXXGEKXGXTPKXGGXKTPX 222
GG PPPPP PP P GAP P G P+ KTP
Sbjct: 92 GGIPPPPPMMGGIPP----PPPMFGAPPPPP-----------PPSGLGVAPQPPRPKTPV 136
Query: 221 FXAXANFLGXKAPG 180
A A LG K PG
Sbjct: 137 NPALAK-LGGKNPG 149
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 25.0 bits (52), Expect(2) = 3.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 398 GGPPPPPXXXFXPPXFL 348
GGPPPPP PP F+
Sbjct: 574 GGPPPPPPP--PPPSFM 588
Score = 22.2 bits (45), Expect(2) = 3.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 401 GGGPPPPP 378
GG PPPPP
Sbjct: 549 GGPPPPPP 556
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 388 GGPPPXXXXPPKXXXXFXGGXXXXXXPPPXXXFXXP 495
G PP PP F GG PPP F P
Sbjct: 328 GMGPPRGFMPPPHPMMFRGGPYPPFFPPPPPHFMRP 363
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 388 GGPPPXXXXPPKXXXXFXGGXXXXXXPPPXXXFXXP 495
G PP PP F GG PPP F P
Sbjct: 328 GMGPPRGFMPPPHPMMFRGGPYPPFFPPPPPHFMRP 363
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -2
Query: 531 GGGGXPPXXKXGGGXKXXXXGGXXXXXXPPXKXXXXFXGXXXXGGG 394
GG G P + GGG GG P + + G GGG
Sbjct: 269 GGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGG 314
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -2
Query: 531 GGGGXPPXXKXGGGXKXXXXGGXXXXXXPPXKXXXXFXGXXXXGGG 394
GG G P + GGG GG P + + G GGG
Sbjct: 232 GGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGG 277
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -2
Query: 531 GGGGXPPXXKXGGGXKXXXXGGXXXXXXPPXKXXXXFXGXXXXGGG 394
GG G P + GGG GG P + + G GGG
Sbjct: 231 GGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGG 276
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -2
Query: 531 GGGGXPPXXKXGGGXKXXXXGGXXXXXXPPXKXXXXFXGXXXXGGG 394
GG G P + GGG GG P + + G GGG
Sbjct: 270 GGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGG 315
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -2
Query: 531 GGGGXPPXXKXGGGXKXXXXGGXXXXXXPPXKXXXXFXGXXXXGGG 394
GG G P + GGG GG P + + G GGG
Sbjct: 269 GGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGG 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,065,978
Number of Sequences: 27780
Number of extensions: 219196
Number of successful extensions: 1071
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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