Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_B02
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 214 9e-56
11_01_0155 - 1287003-1287452 214 9e-56
03_06_0097 - 31632238-31632525,31633386-31633769 43 3e-04
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.008
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 30 2.8
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 29 6.5
02_05_1340 + 35797923-35799881 28 8.6
02_05_1039 + 33707196-33708815 28 8.6
>12_01_0152 - 1168928-1169377
Length = 149
Score = 214 bits (522), Expect = 9e-56
Identities = 95/143 (66%), Positives = 119/143 (83%)
Frame = +3
Query: 87 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 266
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 267 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 446
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 447 PRRCEPKKFGGPGARARYQKSYR 515
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 214 bits (522), Expect = 9e-56
Identities = 95/143 (66%), Positives = 119/143 (83%)
Frame = +3
Query: 87 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 266
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 267 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 446
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 447 PRRCEPKKFGGPGARARYQKSYR 515
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 43.2 bits (97), Expect = 3e-04
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Frame = +3
Query: 99 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 269
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 270 MVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 449
D+ V V GGG Q AI +++AL+ + A+K ++ LL D
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201
Query: 450 RRCEPKKFGGPGARARYQKSYR 515
R E KK G AR R Q S R
Sbjct: 202 RIVERKKAGLKKARKRPQFSKR 223
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 38.3 bits (85), Expect = 0.008
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +3
Query: 117 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 296
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 297 GGGHVAQVYAIRQAISKAL 353
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -3
Query: 233 LKFVLQQSGLNQVQWTAVYTQH--SMTTLAIRNCGG-GFLTSEYLDGLDGLTSCLLHSSH 63
++F+ QS W H S+ TL + +C FL+ ++G +S ++H
Sbjct: 1105 VRFLSLQSCAISGSWLTEMLSHVRSLKTLKLHDCPQIKFLSFSEPAAMEGASSLGSAATH 1164
Query: 62 FDRESKILRIP*N 24
DR+ ++L+IP N
Sbjct: 1165 SDRDEQLLKIPSN 1177
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 191 WTAVYTQHSMTTLAIRNCGGGFLTSEYLD 105
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>02_05_1340 + 35797923-35799881
Length = 652
Score = 28.3 bits (60), Expect = 8.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 264 IFPCRAKGLALEVCTAAVW 208
IFP R +GL + +C+ A W
Sbjct: 560 IFPTRVRGLCIAICSLAFW 578
>02_05_1039 + 33707196-33708815
Length = 539
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 101 LDGLTSCLLHSSHFDRESKILRIP 30
+DG CL H FD E K ++IP
Sbjct: 143 VDGKLECLYHGWQFDGEGKCVKIP 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,000,926
Number of Sequences: 37544
Number of extensions: 452033
Number of successful extensions: 1204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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