Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_B01
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    38   0.002
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    29   0.86 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    28   1.5  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    27   3.5  
SPAC664.08c |||traub transciption factor family protein |Schizos...    27   4.6  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    26   6.1  
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    26   8.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 31/76 (40%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 500 PGPYGEKGLQGLAGEG---GVNSRGAKGDQGDGGRPGSYGLPGPQGWRGDSGLPGDXGDQ 670
           PGP G  G  G  GEG   G +     G  G  G PG +G  GP G+ G  GL G  G  
Sbjct: 202 PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG-GGPGGFGG--GLGGFGG-- 256

Query: 671 XPMGLKGEPGYSGDLG 718
            P G  G PG  G  G
Sbjct: 257 GPGGFGGGPGGHGGPG 272


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 13/47 (27%), Positives = 17/47 (36%)
 Frame = +2

Query: 248 YGADGLEGRIGLPGVPGDWGERGDFGDKGERGTEGSYGRRGDEGPQG 388
           YG+    G  G     G +G    +G  G     G+YG     G  G
Sbjct: 58  YGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAG 104



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 563 GAKGDQGDGGRPGSYGLPGPQGWRGDSGLPGDXGDQXPMGLKGEPGYS 706
           G+  + G+ G   +YG  G     G +G   + G+       G+ GYS
Sbjct: 59  GSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAGYS 106


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/86 (22%), Positives = 40/86 (46%)
 Frame = +3

Query: 327 TKENEEPKDLMADEETKDHRVCLG*KEYLDSQDWTAVVVLMEFKAFPVYKVHLVIEVFQD 506
           T+ +EEP+D  A +   DHR+  G      S+D+  ++  + F       +H   E + +
Sbjct: 181 TEVSEEPEDTRAIDVVLDHRLIEGHDGSTPSEDYEFLIKWVNFS-----HLHCTWEPYNN 235

Query: 507 LTEKKAFKAWQEKVELTQEVQKEIKE 584
           ++  +  K     ++    + +EI+E
Sbjct: 236 ISMIRGSKKVDNHIKQVILLDREIRE 261


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 261 DLKEELVYPVCRETGENAAISGTKENEEPKDLMADEET 374
           D++++ +Y +CR T ENA +  T   +  +D++  E T
Sbjct: 63  DIEKKTIY-LCRPTYENAKLVATHVRQFQRDMLRIEST 99


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 444 LMEFKAFPVYKVHLVIEVFQDLTEKKAFKAWQEKVELTQEVQKEIKEMVVDQVVMDFLDP 623
           L E+K   + K H  ++  Q +++   FKA  + +    E     K+ +V++  +D+ DP
Sbjct: 262 LNEWKNDTLTKWHNRVQAVQGISQSNKFKALNQSIVQQIENSMINKKDLVERTRIDYSDP 321


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 509 YGEKGLQGLAGEGGVNSRGAKGDQGDGGRPGSYGLP-GPQ 625
           +GE+GLQG   +GG+++         GG  G  G+P GP+
Sbjct: 67  FGEEGLQGGGADGGMSADDLFASFFGGGMFGG-GMPRGPR 105


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 471 YKVHLVIEVFQDLTEKKAFKAWQEKVELTQEVQKEIKEMVVDQVVMD 611
           Y  HL+  + +      +FK  +E+ E   +   E+ E+ VD+V +D
Sbjct: 53  YTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVD 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,942
Number of Sequences: 5004
Number of extensions: 58607
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)