Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_A24
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.5  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.7  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   6.1  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   6.1  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   8.1  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    26   8.1  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   8.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 370 PRXPGAVGLPGQFAAVIIEDLXVKPALPKSPSSFWPSVPKTFPPPTCLSQVTSRGCR 200
           P  P ++  P Q AA +       P+ P  PS+  P  PK  PPP   + V +   R
Sbjct: 165 PPIPSSLPPPAQPAAPVKSP----PSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSR 217


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 352 VGLPGQFAAVIIEDLXVKPALPKSPSSFWPSVPKTFP 242
           VGLP  F+  +IE L  KP  P    S    V   FP
Sbjct: 65  VGLPKSFSKAVIETLSYKPFAPICIHSRSDEVVNGFP 101


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 547 FETIPPAERRVFLSRSHTPEPVAV 476
           +ET PP+ERRV L R+   EP A+
Sbjct: 117 YETSPPSERRV-LDRTSKEEPWAL 139


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 658 GKRLLFRSMMS*RDLLDHQSWRNSAWTPTSGL 563
           G+RL    +M+    L  +S+ N AW+  SGL
Sbjct: 83  GRRLFLVCLMAATKFLQDRSFSNRAWSRLSGL 114


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 286 KSPSSFWPSVPKTFPPPTCLSQVTSRGC--RFEKCPLI 179
           +SPS    S+P T PP   + + T  G   RFE+ P I
Sbjct: 359 RSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERDPTI 396


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 148 KFIGSTKKDIQLADISQSDTRVTSPGTNKWEEGRSSARWAK 270
           K  G  K+D    D+   +  + + G + W E +++AR A+
Sbjct: 343 KIFGKRKQDYVSRDVFSDEDDMEATGHDVWREEQAAARAAR 383


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 160 STKKDIQLADISQSDTRVTSPGTN 231
           +T+KDI  A IS S   VTS GT+
Sbjct: 486 TTQKDINHATISNSGILVTSSGTD 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,557
Number of Sequences: 5004
Number of extensions: 67422
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)