Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_A24
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0376 - 22474473-22476947 38 0.014
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 34 0.17
04_01_0615 - 8060085-8060972 33 0.23
07_01_0312 + 2214050-2214556 31 0.92
07_01_1127 + 10456895-10457388,10457488-10458112 29 4.9
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 29 4.9
07_01_0310 + 2209084-2209554 29 6.5
02_05_0212 - 26808484-26809368 29 6.5
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166... 28 8.6
07_03_1433 + 26513728-26514135,26525534-26526280 28 8.6
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 8.6
03_05_0558 - 25606718-25606724,25606918-25606995,25608552-256086... 28 8.6
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105... 28 8.6
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 8.6
>02_04_0376 - 22474473-22476947
Length = 824
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 382 SPAGPRXPGAVGLPGQFAAVIIE-DLXVKPALPKSPSSFWPSVPKTFPPP 236
SPA PR L AAV+ D + P+LP+ P+ PS+P++ P P
Sbjct: 4 SPALPRSTNPAALLAHLAAVLTSPDWFLNPSLPRLPALLTPSLPESLPVP 53
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 33.9 bits (74), Expect = 0.17
Identities = 30/97 (30%), Positives = 40/97 (41%)
Frame = -3
Query: 538 IPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQSRRPP*FVLSPAGPRXP 359
+PPA L + P P V P LP +A S L + PP ++ PA P P
Sbjct: 26 MPPAVVPPSLPTTTPPAPTVVAPPLPTTPPPAVVAPSPPLPPLT--PPPAIVPPALPPPP 83
Query: 358 GAVGLPGQFAAVIIEDLXVKPALPKSPSSFWPSVPKT 248
+ A + V PALP P+ PS+P T
Sbjct: 84 PLPAIVVPPALPPTPAIAVPPALPPIPAIVPPSLPPT 120
Score = 32.7 bits (71), Expect = 0.40
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = -3
Query: 556 PNSFETIPPAERRVFLSRSHTPEPVAVIPD--LPPICLFISIAASAFLLAQSRRPP*FVL 383
P+ T PPA V TP P V P LPP+ +I A L P V+
Sbjct: 33 PSLPTTTPPAPTVVAPPLPTTPPPAVVAPSPPLPPLTPPPAIVPPA--LPPPPPLPAIVV 90
Query: 382 SPAGPRXPGAVGLPGQFAAVIIEDLXVKPALPKSPSSFWPSVPKTFP 242
PA P P A+ +P + V P+LP +P + P V + P
Sbjct: 91 PPALPPTP-AIAVPPALPPI---PAIVPPSLPPTPEANLPCVAELAP 133
>04_01_0615 - 8060085-8060972
Length = 295
Score = 33.5 bits (73), Expect = 0.23
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = -3
Query: 511 LSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQSRRP---P*FVLSPAGPRXPGAVGLP 341
L ++ +P+A P P LF + + A S P P VL P +
Sbjct: 62 LPKAEVQQPLATAPPSLPSSLFAATVEETVMTASSPLPLPHPAEVLQPLVAAPSSQMSFA 121
Query: 340 GQFAAVIIEDLXVKPALPKSPSSFWPSVPK 251
+ AAV+ V PALP +PS+ PS P+
Sbjct: 122 SKAAAVLPCLTTVGPALPGAPST--PSQPR 149
>07_01_0312 + 2214050-2214556
Length = 168
Score = 31.5 bits (68), Expect = 0.92
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = -3
Query: 487 PVAVIPDLPPICLFISIAASAFLLAQSRRPP*FVLSPAGPRXPGAVGLPGQFAA--VIIE 314
P +P +P + ++ A + A S P PA P P AV LP A V +
Sbjct: 85 PKVALPPMPAVPAVPTVPAVPAVPAASLPP-----MPAVPAVPNAV-LPPMPAVPKVTLP 138
Query: 313 DLXVKPALPKSPSSFWPSVPKTF--PPPT 233
+ PA+PK PSVP F PPP+
Sbjct: 139 PMPSMPAVPKVTLPPMPSVPMPFLAPPPS 167
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/84 (25%), Positives = 31/84 (36%)
Frame = -3
Query: 487 PVAVIPDLPPICLFISIAASAFLLAQSRRPP*FVLSPAGPRXPGAVGLPGQFAAVIIEDL 308
P A +P +P + + A P PA P P +P A + +
Sbjct: 60 PAATLPPMPAVPTVPNAALPPMPAVPKVALPPMPAVPAVPTVPAVPAVP----AASLPPM 115
Query: 307 XVKPALPKSPSSFWPSVPKTFPPP 236
PA+P + P+VPK PP
Sbjct: 116 PAVPAVPNAVLPPMPAVPKVTLPP 139
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 12 PTLXVXREPLNVXDILVSXQRNLSQVKMNSKLLYFFAT-VLVCVNAEVYWEYEEGYPISG 188
PT + EP+ D L + ++ L ++ + FAT LV + +E++ YE P G
Sbjct: 41 PTFAIAVEPMEASDWLRTVEKKLGLIQCTDQERVVFATHQLVGLASELWDSYEASRP-EG 99
Query: 189 HFSKRHPRDVTWDK 230
H +TWD+
Sbjct: 100 H-------TITWDE 106
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -3
Query: 379 PAGPRXPGAVGL--PGQFAAVIIEDLXVKPALPKSPSSFWPSVPK-TFPPPTCLS 224
PAG + A PG AAV + V P P + WP++P PPPT L+
Sbjct: 26 PAGKKAAAAAAWKRPGNGAAVPV---VVAPGSPIMDADSWPALPGLASPPPTTLT 77
>07_01_0310 + 2209084-2209554
Length = 156
Score = 28.7 bits (61), Expect = 6.5
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = -3
Query: 493 PEP-VAVIPDLPPICLFISIAASAFLLAQSRRPP*FVLSPAGPRXPGAVGLP-GQFAAVI 320
P P V +P +P + L A A + + PP PA P P AV P V
Sbjct: 71 PMPAVPAVPTVPAVALPPMPAVPA--VPTATLPP----MPAVPAVPNAVLPPIPAVPKVT 124
Query: 319 IEDLXVKPALPKSPSSFWPSVPKTF--PPPT 233
+ + PA+PK PSVP F PPP+
Sbjct: 125 LPPMPSIPAVPKVTLPPMPSVPMPFLAPPPS 155
>02_05_0212 - 26808484-26809368
Length = 294
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 304 VKPALPKSPSSFWPSVPKTFPPPTCLSQV 218
V PA P+ P + SVP + PPP L V
Sbjct: 70 VSPAKPRKPKAKAASVPPSSPPPVPLGPV 98
>08_02_0909 -
22515326-22515418,22515992-22516150,22516583-22516658,
22517980-22518141,22518826-22519259,22519723-22521414
Length = 871
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Frame = +3
Query: 348 PTAPGXLGPAGDSTNYGG----------RLDWANKNAEAAIDINRQIGGRSGMTATGSGV 497
PT+ G G G+ +GG L ++ A+ ++++ Q+GG G+ + G G
Sbjct: 102 PTSAGEFGGGGEVRVWGGGNRSGEAAFISLQSGSRVAKRSMELGVQMGGEMGLGSNGGG- 160
Query: 498 WDLDKNTRLSAGGMVSKEFGHRRPD 572
AGG V E HR D
Sbjct: 161 ---------GAGGQVHDEMPHRNVD 176
>07_03_1433 + 26513728-26514135,26525534-26526280
Length = 384
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 298 PALPKSPSSFWPSVPKTFPPPT 233
P SP S PS+P T+PPP+
Sbjct: 31 PITYPSPPSLSPSMPPTYPPPS 52
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 384 STNYGGRLDWANKNAEAAIDINRQI 458
S+ +GG L W N + E+ +D +RQ+
Sbjct: 960 SSLHGGSLPWKNTDFESTVDFDRQL 984
>03_05_0558 -
25606718-25606724,25606918-25606995,25608552-25608665,
25608755-25609266
Length = 236
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -1
Query: 579 RRRPVFCDRIPSRPYRRLRGGCSCQDPTXXXXXXSFQICLRSVYLYQ*QLPHSYWPSLDV 400
+R VF D P R L G C+C D Q+C R + + ++Y LDV
Sbjct: 135 QRLRVFIDSAPGR----LIGICACNDEKLGHSGYLLQLCGR-LGVLDGNWEYNYVALLDV 189
Query: 399 HRSLYCPLQ 373
+ YC Q
Sbjct: 190 PKQNYCEYQ 198
>02_01_0148 -
1051121-1051192,1051378-1051512,1052343-1052396,
1052501-1052581,1052667-1052826,1053346-1053453,
1053543-1053718,1053952-1054002,1054154-1054264,
1054493-1054547,1055667-1055789,1055922-1056007,
1056235-1056349,1056429-1056667
Length = 521
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 185 ANWISFFVLPINFCVDTHQDRGEEI 111
A W F LP + +D H DR E++
Sbjct: 69 ALWAHFHRLPARYALDVHADRAEDV 93
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/56 (39%), Positives = 25/56 (44%)
Frame = -3
Query: 403 RPP*FVLSPAGPRXPGAVGLPGQFAAVIIEDLXVKPALPKSPSSFWPSVPKTFPPP 236
+PP L PA P P A+ P A V PA K P SF P + T PPP
Sbjct: 225 KPP-TALRPAIP--PAAMPKPPSVAPVQPPQRPPAPAT-KPPPSFPPQLAPTMPPP 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,526,219
Number of Sequences: 37544
Number of extensions: 497677
Number of successful extensions: 1598
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -