Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_A23
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   6.3  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    26   6.3  
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    26   8.3  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   8.3  

>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 577 RNCMCLHILSNLALVH-LQFVWNDCFLW 497
           RN   LH  S    VH L  +W++CFL+
Sbjct: 351 RNLKNLHYNSKKEFVHDLMLIWSNCFLY 378


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 560 TYSKQPSSGSPSICVE*LFSLVFSNLYSFS 471
           +YS++P   SPS  ++  FS V S L  FS
Sbjct: 403 SYSEEPPQSSPSSTLQYTFSTVRSALSGFS 432


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 457 RLTKSLKEYKFENTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVGFMKNKSLVHSHCIS 636
           ++ K   EY  E T     +  I+G+ +L      STY F      F ++K+   SHC  
Sbjct: 191 KICKRYPEYTVEFTGCGLLNDLIDGD-DLLHFRPSSTYGFCTQIAVFHQSKNNAASHCFL 249

Query: 637 QSENT 651
           + +N+
Sbjct: 250 KDQNS 254


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +1

Query: 265 PNYYDIGGTYYLEDLPDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISHGSETEIDKK 444
           P + D      + D  + +     E +  I  L   I++  +GS +    +    + D  
Sbjct: 15  PKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYHFNSIAFDNDAS 74

Query: 445 QKIVRLTKSLKEYKFENTR-ENSHSTQIEG 531
           Q+++   KSL E  FE  R E +  + ++G
Sbjct: 75  QRVIWRDKSLGEDDFEGMRSEKASGSSVQG 104


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 427 TEIDKKQKIVRLTKSLKEYKFENTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVG 594
           ++ID   ++ R  K ++  K +N R ++    +  E      +YV  +NF N  VG
Sbjct: 291 SKIDPSYRLERALKHIEVLKLKNYRISADRLSVIRET---LNQYVGVHNFHNFTVG 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,678,820
Number of Sequences: 5004
Number of extensions: 81104
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)