Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_A19
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...   159   4e-40
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...   157   2e-39
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    31   0.17 
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   3.6  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   6.3  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score =  159 bits (387), Expect = 4e-40
 Identities = 72/122 (59%), Positives = 96/122 (78%)
 Frame = +2

Query: 152 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 331
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 332 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 511
           NG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++RS
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRS 125

Query: 512 QE 517
           QE
Sbjct: 126 QE 127


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score =  157 bits (382), Expect = 2e-39
 Identities = 72/122 (59%), Positives = 95/122 (77%)
 Frame = +2

Query: 152 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 331
           IVKKRTK F RHQSD + ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 332 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 511
           NG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++RS
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRS 125

Query: 512 QE 517
           QE
Sbjct: 126 QE 127


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = -1

Query: 367 FNIVN*DLTESIWEHMTGLLVGTVTNVGHQVLTLEPPADSVVNTSRF-TPIPLKFV--IA 197
           F+I + D+ ++   H+ G+   T    G + +T     DS +    + TP+P+KFV  IA
Sbjct: 381 FDIRSPDIVQAYDHHLGGINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIA 438

Query: 196 IRLMPDKSLRP 164
           +  MP  +LRP
Sbjct: 439 MHSMPRVALRP 449


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 520 ILLGAEASGRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVL 398
           +L  ++   R+ HSD + + +F DQ   +RR  +  LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 886 PPPPPPXXXKKKKXK 842
           PPPPPP   KK+K K
Sbjct: 25  PPPPPPGYVKKRKNK 39


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 161 F*RLSACKQGLIASLYVAFRNATVNHAV 78
           F RLS C  GL +S+    RN   NH +
Sbjct: 622 FVRLSGCHDGLASSISRIIRNVWKNHVI 649


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 332 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 505
           N  R+  +HN++ ++ L+ Q  ++C +    V     ++  ++  A ++ + + ++A   
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654

Query: 506 RSQENE 523
           R +  +
Sbjct: 655 RRESQK 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,167
Number of Sequences: 5004
Number of extensions: 41609
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)