Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_A16
         (968 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    27   4.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.2  

>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 701 KXPAKRGXETGKKRARLRGVXSXXGPRPPLTEPXKKXQAQSXXGXXNP 844
           K   ++  +T  K+  ++ + S   P PP   P  K QA +     NP
Sbjct: 185 KKEPEKPKKTKTKKETIQVIESLNNPTPPTDFPGAKEQASTGNAPKNP 232


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +3

Query: 867 PAGXPPXXPPPXG--XPXXPTPXXXXG 941
           P G PP  PPP G   P  P P    G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = +2

Query: 776 PRPPLTEPXKKXQAQSXXGXXNPAXXXXEKPRRXPPXKXXPGGPPPXPXP 925
           P PP         A +      PA      P   PP      GPPP P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,363
Number of Sequences: 5004
Number of extensions: 30057
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)