Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_A15
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    28   1.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.6  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    27   4.7  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   4.7  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    27   4.7  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    26   6.3  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   8.3  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   8.3  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   8.3  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 623 WNVNCDIPNTDYAYSDVLGPMLQDVFD 703
           WN++ D+   +Y +SD  G + Q+V +
Sbjct: 554 WNISDDLGQVEYIFSDKTGTLTQNVME 580


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 569  DCAKSFPFICKKTLASLEWNVNCDIPNTDYAYSDVLGPMLQDVFD 703
            DC +S    C +   +L +NV+ DIP         +G ML+ + D
Sbjct: 1868 DCMQSVYSACAEKGINLSYNVSPDIPFFTAGDGMKIGQMLKSILD 1912


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 108 YIYSIHKTRVSTTERRAKN 52
           +IYSIH+ +VST+   +KN
Sbjct: 546 FIYSIHEDKVSTSNDHSKN 564


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 623 WNVNCDIPNTDYAYSDVLGPMLQDV 697
           WN++ D+   +Y +SD  G + Q++
Sbjct: 585 WNISDDLGQIEYIFSDKTGTLTQNI 609


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 287 WTLRRLAKWRGLLSFTLNDKFEFDAVTTYWNTSQPFEWISIGI 415
           W +RR+  WR LL      +     V+ Y N     E IS+G+
Sbjct: 114 WPVRRIESWRALLQHQKEGRINKIGVSNY-NIHHLEEIISLGL 155


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 287 WTLRRLAKWRGLLSFTLNDKFEFDAVTTYWNTSQPFEWISIGISSQMAKGVFETVDGVSI 466
           WT   ++   GL     N    FD  +   +TS P+ W  +GI+S +A G+     G+ I
Sbjct: 9   WTTTVMSIIVGLYMLFHNSGESFDFGSFLLDTS-PYTWGLLGIASCVAFGIIGAAWGIFI 67


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 202 ENKFFRKDYTYIESTESFYKIHTLYKKWVDAK 297
           E     KDYT  E  + F K   +YKK  D K
Sbjct: 5   EESEINKDYTVQEDLDEFAKYTCVYKKRHDEK 36


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = -1

Query: 716 PGHRGQI-------HLVASAQVHRCMRSRC*ECHNSHSTRVK-PVFSC 597
           PGH G I       H +  +Q++  +RS C  CH+   ++VK  +F C
Sbjct: 74  PGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFC 121


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 868  EAKDTAPAKYFXLTLSFGAN 809
            +A DTAPA  F    SFGAN
Sbjct: 984  DAGDTAPASGFKSGFSFGAN 1003


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,687,401
Number of Sequences: 5004
Number of extensions: 78450
Number of successful extensions: 211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)