Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_A14
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.23 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 43/173 (24%), Positives = 46/173 (26%), Gaps = 1/173 (0%)
 Frame = +2

Query: 143  PXGVPPPWAXXKXPGXPLFPXKXXFFPPLXPKKXXXXSX*NXXFXPSPPXKXSPXXXPNP 322
            P G PP  A     G P  P      PP+ PK               P  K S    P P
Sbjct: 1079 PSGAPPVPAPS---GIPPVPKPSVAAPPV-PKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134

Query: 323  XXXXXXXPXPXXFXXFSPXXXLPFXXXGXPXLXXFXGNPPXXXGKSPFPPXPXPXXXKPX 502
                   P P       P   +P      P        PP     S  PP P P    P 
Sbjct: 1135 VPSGAP-PVPKPSVAAPP---VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190

Query: 503  PXPXXXGPXXPQXKXPXXGXGPXXXP-WXPXXXXPXXPXXPXPGXXXXXPGXP 658
              P    P  P+   P  G  P   P   P    P     P P      P  P
Sbjct: 1191 VPPPSEAPPVPK---PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/64 (28%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
 Frame = +2

Query: 440  PXXXGKSPFPPXPXPXXXKPXPXPXXXGPXXPQXKXPXXGXGPXXXP-WXPXXXXPXXPX 616
            P     S  PP P P    P P P    P  P+   P     P   P   P    P    
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPK---PSVAVPPVPAPSGAPPVPKPSVAA 1130

Query: 617  XPXP 628
             P P
Sbjct: 1131 PPVP 1134



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 30/154 (19%), Positives = 33/154 (21%), Gaps = 6/154 (3%)
 Frame = +2

Query: 437  PPXXXGKSPFPPXPXPXXXKPXPXPXXXGPXXPQXKXPXXGXGPXXXPWXPXXXXP---X 607
            PP     +  PP P P    P P P    P             P   P       P    
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081

Query: 608  XPXXPXPGXXXXXPGXPXXXXXXXPXXXXPXGXXXXXAGXXXXXR---RXPPXPXXXPPP 778
             P  P P      P  P       P            +G     +     PP P     P
Sbjct: 1082 APPVPAPSGIPPVP-KPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140

Query: 779  XXXPPXPXXXPXXXXXXXPPXXXXXXXXXXXPXP 880
                P     P       PP           P P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 749  PPXPXXXPPPXXXPPXPXXXP 811
            PP P   PPP   PP P   P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPP 1728


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/54 (31%), Positives = 18/54 (33%)
 Frame = +1

Query: 319 PPXXKXXXPXXXPIFXFFPXXXPTLXGPXXPXPFXXXGEPPPXXXKVPFPPXPP 480
           PP      P   P     P   P + GP  P P      PP      P PP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP------PPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/58 (31%), Positives = 18/58 (31%)
 Frame = +2

Query: 455 KSPFPPXPXPXXXKPXPXPXXXGPXXPQXKXPXXGXGPXXXPWXPXXXXPXXPXXPXP 628
           KSP PP P      P P P    P  P    P     P   P       P  P  P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP----PPPPPPGVAGAGPPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 793 GGXXXGGGXXXXXGGXPAGXGXGP 722
           GG    GG     GG P G G GP
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGGP 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.156    0.566 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,550,785
Number of Sequences: 5004
Number of extensions: 19425
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)