Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_A09
(958 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1125 + 31085106-31085714 34 0.19
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 30 3.1
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 30 3.1
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 29 5.5
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 7.2
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 29 7.2
10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878 28 9.6
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.6
06_03_0252 + 18747333-18747448,18747668-18747734,18747938-187480... 28 9.6
>04_04_1125 + 31085106-31085714
Length = 202
Score = 33.9 bits (74), Expect = 0.19
Identities = 18/48 (37%), Positives = 19/48 (39%)
Frame = +1
Query: 763 PPGKPPXRCXSXWXPTPARLTRXTLVPAFPPLPGKRXXXXPIPSTPVG 906
PP P + W PTPA PA P P P PSTP G
Sbjct: 66 PPATPTPPTPTPWTPTPATPPPTPATPATPTTP---PTPAPAPSTPTG 110
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 29.9 bits (64), Expect = 3.1
Identities = 25/74 (33%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Frame = +1
Query: 733 GLIKNTKAVSPPGKPPXRCXSXWXP--TPARLTRXTLVPAFPPLPGKRXXXXPIPSTPVG 906
GL T SP P S P TPA T + PA PPLP P P
Sbjct: 23 GLAATTPTTSPLPLAPAAAASSSNPNATPADTTPTSPPPASPPLPSATPPLAASPPPPPP 82
Query: 907 YSXXRXEGRSXPKP 948
R S PKP
Sbjct: 83 PPPPR-NSPSPPKP 95
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +1
Query: 775 PPXRCXSXWXPTPARLTRXTLVPAFPPLPGKRXXXXPIPSTPVG 906
PP S W P P R + VP PP G P P P G
Sbjct: 479 PPRDNASSWAPPPPRGNPPSWVPLPPPPGGNAPSWVPPPPQPRG 522
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 29.1 bits (62), Expect = 5.5
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 727 GQGLIKNTKAVSPPGKPPXRCXSXWXPTPARLTRXTLVPAFPPLP 861
G G N + SPP PP P P+R T P PP P
Sbjct: 311 GSGAEMNKQMASPPSNPPP-APPPPPPPPSRFNNTTPKPPPPPPP 354
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 7.2
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 475 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 630
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 28.7 bits (61), Expect = 7.2
Identities = 26/72 (36%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Frame = +1
Query: 754 AVSPPGKPPXRCXSXWXPTPARLTRXTLVPA-FPPLPGKRXXXXPIPST-PVGYSXXRXE 927
A S P PP R S W P+PA A F P P P P T GY R
Sbjct: 256 ASSAPAFPPRRPNS-WAPSPAPWPYTPGQQAKFSPPPALYASPTPSPPTFAGGYLQSRLS 314
Query: 928 GRSXPK--PGXG 957
G + P PG G
Sbjct: 315 GETAPMIIPGGG 326
>10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878
Length = 947
Score = 28.3 bits (60), Expect = 9.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 899 GVEGMGKXXXRXPGRGGKAGTRVFRVXRAGVGNQ 798
GV+G G R G GG++G F V R G Q
Sbjct: 869 GVQGSGLGWPRSGGLGGRSGLPGFEVQRLAFGAQ 902
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 9.6
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +1
Query: 724 PGQGLIKNTKAVSPPGKPPXRCXSXWXPTPARLTRXTLVPAFPPLPGKRXXXXP-IPSTP 900
P G I N PP PP R S A ++ P PPLP P +PS P
Sbjct: 654 PAPG-IGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPSAP 712
>06_03_0252 +
18747333-18747448,18747668-18747734,18747938-18748068,
18748098-18748209
Length = 141
Score = 28.3 bits (60), Expect = 9.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 869 RXPGRGGKAGTRVFRVXRAGVGNQXEXXRXGGXPG 765
R G G+ G RV R RAG G Q + + PG
Sbjct: 68 RSLGGQGRGGVRVLRRSRAGGGEQDDAKKERAEPG 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,757,343
Number of Sequences: 37544
Number of extensions: 350380
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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