Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_A08
(918 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 33 0.42
10_08_0224 - 15993497-15994075 30 2.2
10_08_0221 - 15980370-15980927 29 5.2
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067... 29 5.2
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656... 29 5.2
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.8
12_02_0082 - 13372997-13373863,13373928-13374386 28 9.0
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.0
10_08_0223 - 15986763-15987575 28 9.0
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 32.7 bits (71), Expect = 0.42
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 528 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRFPLEAPSCALLFRPL--PLTGYLSA 701
CWR + T D Q + +KD P + PSC L+F PL PL L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342
Query: 702 F 704
F
Sbjct: 343 F 343
>10_08_0224 - 15993497-15994075
Length = 192
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = -2
Query: 752 TAXGY--GXXRHASPKGEKGGQVSGKRQGSEQESARGSFQGETXGIFIVLSGFATSDLSV 579
T+ GY G AS G GG G+ G+ S GS G G GF++ + S
Sbjct: 98 TSSGYYQGYTGDASAGGGGGGNGGGQGGGTVGSSGYGSGFGTGSGASEGAGGFSSPNPSY 157
Query: 578 DFCDARQGGGAYG 540
DA GG G
Sbjct: 158 ANADASANGGGTG 170
>10_08_0221 - 15980370-15980927
Length = 185
Score = 29.1 bits (62), Expect = 5.2
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = -2
Query: 758 YXTAXGYGXXRHASPKGEKGGQVSGKRQ--GSEQESARGSFQGETXGIFIVLSGFATSDL 585
Y A GYG +G GGQ G Q GS S GS G+ G G+A +
Sbjct: 93 YGQAGGYGPYGGGYAQGGGGGQGGGGGQNGGSGYGSGSGSGYGQAGGYGPYGGGYAQA-- 150
Query: 584 SVDFCDARQGGGAYGKTPATRPFYGSWPFAG 492
+ GGG G++ YGS +G
Sbjct: 151 -----GGQGGGGGGGQSGPGGSGYGSGSGSG 176
>06_03_0824 +
25105450-25105482,25105649-25106485,25106580-25106738,
25106830-25106886,25106971-25107202,25107338-25107638,
25107703-25107976,25108051-25108152,25108244-25108525
Length = 758
Score = 29.1 bits (62), Expect = 5.2
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +3
Query: 531 WRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRFPLEAPSCALLFRPL--PLTGYLSAF 704
WR + T D Q + +KD P + PSC L+F PL PL L AF
Sbjct: 622 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAF 681
>03_02_0225 +
6565337-6565369,6565564-6565734,6566113-6566400,
6566495-6566653,6566745-6566801,6566886-6567117,
6567253-6567553,6567618-6567891,6567966-6568067,
6568159-6568440
Length = 632
Score = 29.1 bits (62), Expect = 5.2
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +3
Query: 531 WRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRFPLEAPSCALLFRPL--PLTGYLSAF 704
WR + T D Q + +KD P + PSC L+F PL PL L AF
Sbjct: 496 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAF 555
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.8
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 360 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 515
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>12_02_0082 - 13372997-13373863,13373928-13374386
Length = 441
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 651 SCALLFRPLPLTGYLSAFLP 710
SCALLF P+PL G LP
Sbjct: 164 SCALLFSPMPLDGPTLGLLP 183
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 309 NESAN---ARGEAVCVLGALPLPRSLTRCAR 392
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>10_08_0223 - 15986763-15987575
Length = 270
Score = 28.3 bits (60), Expect = 9.0
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Frame = -2
Query: 713 KGEKGGQVSGKRQGSEQESARGSFQGE-TXGIFIVLSGFATS--DLSVDFCDARQGGGA- 546
+G GG G GS + G QG G I ++ +S D + + DA GGG
Sbjct: 138 EGGGGGGGGGSNGGSGYGAGAGVGQGAGESGSSIAMAPSPSSGGDYNGGYADAAGGGGGG 197
Query: 545 ---YGKTPATRPFYGSWPFAG 492
+G PA P YG AG
Sbjct: 198 GGGHGGGPAASPSYGVGAGAG 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,423,580
Number of Sequences: 37544
Number of extensions: 439475
Number of successful extensions: 1454
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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