Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_A03
         (898 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL354775-1|CAI12730.1|  276|Homo sapiens protein ( Human DNA seq...    32   2.5  
X98893-1|CAA67398.1|  589|Homo sapiens hTAFII68 protein.               31   7.5  
U51334-1|AAC50932.1|  592|Homo sapiens putative RNA binding prot...    31   7.5  
BC046099-1|AAH46099.2|  592|Homo sapiens TAF15 RNA polymerase II...    31   7.5  
AY197697-1|AAO13485.1|  589|Homo sapiens TAF15 RNA polymerase II...    31   7.5  
AB010067-2|BAA33812.1|  589|Homo sapiens RBP56/hTAFII68 protein.       31   7.5  
AB010067-1|BAA33811.1|  592|Homo sapiens RBP56/hTAFII68 protein.       31   7.5  

>AL354775-1|CAI12730.1|  276|Homo sapiens protein ( Human DNA
           sequence from clone RP11-223F20 on chromosome 13
           Contains a novel heterogeneous nuclear ribonucleoprotein
           family A protein and).
          Length = 276

 Score = 32.3 bits (70), Expect = 2.5
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 272 GGGKVFGTLGDSDQGLFGK--GGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGR 439
           GG   +G  G   +G +G+  GGYNR F  D      G  Y +R  G GG  T YG +
Sbjct: 141 GGRGGYGGGGGGSRGSYGRGDGGYNR-FGRDGGNYGGGPGYSSRG-GYGGGGTGYGNQ 196


>X98893-1|CAA67398.1|  589|Homo sapiens hTAFII68 protein.
          Length = 589

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 272 GGGKVFGTLGDSDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 448
           GG +  G  G    G  G GG     +  DR   +G  YG  R  G GGD   YGG++  
Sbjct: 520 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 576

Query: 449 ANE 457
            N+
Sbjct: 577 RND 579


>U51334-1|AAC50932.1|  592|Homo sapiens putative RNA binding protein
           RBP56 protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 272 GGGKVFGTLGDSDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 448
           GG +  G  G    G  G GG     +  DR   +G  YG  R  G GGD   YGG++  
Sbjct: 523 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 579

Query: 449 ANE 457
            N+
Sbjct: 580 RND 582


>BC046099-1|AAH46099.2|  592|Homo sapiens TAF15 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 68kD
           protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 272 GGGKVFGTLGDSDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 448
           GG +  G  G    G  G GG     +  DR   +G  YG  R  G GGD   YGG++  
Sbjct: 523 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 579

Query: 449 ANE 457
            N+
Sbjct: 580 RND 582


>AY197697-1|AAO13485.1|  589|Homo sapiens TAF15 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 68kD
           protein.
          Length = 589

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 272 GGGKVFGTLGDSDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 448
           GG +  G  G    G  G GG     +  DR   +G  YG  R  G GGD   YGG++  
Sbjct: 520 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 576

Query: 449 ANE 457
            N+
Sbjct: 577 RND 579


>AB010067-2|BAA33812.1|  589|Homo sapiens RBP56/hTAFII68 protein.
          Length = 589

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 272 GGGKVFGTLGDSDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 448
           GG +  G  G    G  G GG     +  DR   +G  YG  R  G GGD   YGG++  
Sbjct: 520 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 576

Query: 449 ANE 457
            N+
Sbjct: 577 RND 579


>AB010067-1|BAA33811.1|  592|Homo sapiens RBP56/hTAFII68 protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 272 GGGKVFGTLGDSDQGLFGKGGYNREFFNDDRGKLTGQAYG-TRVLGPGGDSTSYGGRLDW 448
           GG +  G  G    G  G GG     +  DR   +G  YG  R  G GGD   YGG++  
Sbjct: 523 GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGG 579

Query: 449 ANE 457
            N+
Sbjct: 580 RND 582


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,379,883
Number of Sequences: 237096
Number of extensions: 2418397
Number of successful extensions: 6277
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6270
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)