Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_A01
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0192 - 2245794-2246186,2246699-2247490                           32   0.71 
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130...    31   0.94 

>04_01_0192 - 2245794-2246186,2246699-2247490
          Length = 394

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 20/90 (22%), Positives = 36/90 (40%)
 Frame = -3

Query: 384 LEIHNYLQSCFKLNASLEFNDKVYFPNDFAXPMTAIAGPALINPSRTLRPTFSIFLKSFH 205
           +E+  Y Q+ F +  SL+   K Y P      +  +A    +    T+ P F +     H
Sbjct: 263 VELQPYRQTAFGIRGSLKLRSKFYGPFKVIEKVGQVAYRLQLPNDATIHPVFHVSQLKKH 322

Query: 204 LGSGAALTAPRASTNAKTKLKIRTKFILPK 115
           LG  A       S   + ++K +   +L +
Sbjct: 323 LGKRAIPMPNLPSVGPEGQIKTQPTAVLQR 352


>08_01_0162 -
           1302497-1302787,1304608-1305271,1305380-1306927,
           1307360-1308768
          Length = 1303

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = -3

Query: 228 SIFLKSFHLGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDANAKNN 49
           SI     HLG G  L+ PR   +     K+  K +LP+  S G F    T SF+ +  ++
Sbjct: 219 SILAMRLHLGYG--LSGPRHRPDYNLSYKVDLKSVLPELVSVG-FSASTTTSFELHQLHS 275

Query: 48  PILXGSHQP 22
                S +P
Sbjct: 276 WYFSSSLEP 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,737
Number of Sequences: 37544
Number of extensions: 247321
Number of successful extensions: 490
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)