Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_P19
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    31   0.22 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   4.7  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    27   4.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    26   8.1  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = -2

Query: 327 NGLQHVLVEAEGDT*ASTSPAPRADTRACRVPPVDQRLHF--GVQSLWVEXRHGGRGWC- 157
           N L  VL+ +       T   P   + +  VPP +  + F  G+ S+W E  H    WC 
Sbjct: 327 NSLDDVLLVSIAGGGLDTHVVPEYSSISTFVPPSNGLMVFTSGIPSVWAEIDHQAMAWCE 386

Query: 156 -IARVLTR 136
              RVL R
Sbjct: 387 NFRRVLIR 394


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 516 APQQHAELQRVHQVLHQEQSAQ 451
           APQQH +LQR+  +L   Q  Q
Sbjct: 129 APQQHPQLQRMMPILSSNQPIQ 150


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 462 VPGGGPGGLAEVRRAA 509
           V GGG GGLA  RRAA
Sbjct: 12  VIGGGSGGLASARRAA 27


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 88  TPLVSHSHALRKVSACPSQHPRYAPSST 171
           TP  SH  A +++S  PS+HP+ + S+T
Sbjct: 254 TPFESHGPA-KQISVQPSEHPKPSISTT 280


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 157 HSEGADSGMLTLYVTRENEKRAAFVTGAAPDVXRRS 50
           HS G D+  +T Y+ +EN K      G  P    +S
Sbjct: 109 HSNGLDALAMTPYIVKENNKTHLSPRGNYPSEAEKS 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,847
Number of Sequences: 5004
Number of extensions: 36193
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)