Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_P15
         (1295 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/53 (26%), Positives = 15/53 (28%)
 Frame = +3

Query: 1080 QFPPXLTXSPXPPHXXPXPPSHPPXXPPXXPXXAQPPPXXPXNPXPXPPLXXP 1238
            Q  P +T     P      P   P   P  P    PP      P   PP   P
Sbjct: 4    QKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
 Frame = +3

Query: 1077 TQFPPXLTXSPXP-PHXXPXPPSH-PPXXPPXXPXXAQPPPXXP-XNP 1211
            +Q P      P P PH  P  P    P  P   P    PP   P  NP
Sbjct: 13   SQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 704 PXPPXXPLSXPFAXPXPXPXSPTXPPPP 787
           P P   P   P A     P +P+  PPP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 14/55 (25%), Positives = 16/55 (29%)
 Frame = +3

Query: 1062 QXIPATQFPPXLTXSPXPPHXXPXPPSHPPXXPPXXPXXAQPPPXXPXNPXPXPP 1226
            Q I   Q     + +P P       P  P    P  P    PP   P  P    P
Sbjct: 6    QPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 752  PXPXSPTXPPPPP 790
            P   SP  PPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 758 PXSPTXPPPPP 790
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,838
Number of Sequences: 438
Number of extensions: 6668
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44543373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)