Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_P14
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   4.6  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   4.6  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   6.1  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   6.1  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 602  WSRRWAAVAGGSRCCPWALLLGAPTLFWYPW 510
            + R W  + GGS   PW +L  A  LF   W
Sbjct: 2164 YGRSWKYLWGGSLLAPWKMLTIAFFLFLSMW 2194


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 662 VVAKNRTGKSNFITSIRETLKTHY 733
           +V +N +GKSNF  +IR  L   Y
Sbjct: 30  IVGRNGSGKSNFFAAIRFVLSDAY 53


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 446 HGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGG 333
           HGP  + A       +    L  S +   LT GT++GG
Sbjct: 420 HGPCVSGAMNTIITTRAGKDLISSLVAGLLTIGTRFGG 457


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 661 FNYLSGFPFRQQVVSEQRSPGLVVGQLLLEVAAA 560
           FNY   +P  + ++ + R PG++    L E A+A
Sbjct: 474 FNYFREYPGSKDIMLDGRGPGMLEKMYLSEKASA 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,460,876
Number of Sequences: 5004
Number of extensions: 73456
Number of successful extensions: 216
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)