Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_P12
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.93 
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    29   1.2  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    28   1.6  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   2.1  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   3.7  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    27   4.9  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    27   4.9  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.9  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   6.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   8.6  
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    26   8.6  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 223 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 366
           ET   K S   K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 712 FVHGGLKVPVVFEGVSGAITVDDTVIT 632
           F H  +    V  G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 821 TSPLCPKLHGLRWRPYLHQVS 759
           T     KLHG+RW  Y H+VS
Sbjct: 181 TLAFASKLHGMRWFMYTHKVS 201


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 190 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 306
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -1

Query: 284 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAQHGEDEGKQS 105
           SL+ S FFS  YSE   +   +  +   IYS S S  S L  ++ +  +   G+++  + 
Sbjct: 6   SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGS-LNPAIYVNWTEPWGQEDEVEV 64

Query: 104 QAXTWR 87
               W+
Sbjct: 65  LIFNWK 70


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 837 LLHGTSSLLSVVVKGLPINMLKXNY 911
           +L+G SS L V++KGL    L+ NY
Sbjct: 302 VLYGFSSFLPVIIKGLGFVGLQTNY 326


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 686 WYLEPSMYE--SDVMFFVYNREYNSVMTLDEDMAANE--DREAWGTAEKXPVIPTFAWYI 853
           +Y EP+  +   D +   YNR Y  V++LD+ +  +E   +  W TA K P +  F  Y+
Sbjct: 155 YYQEPAFEKLLPDPLPEPYNRPYTLVLSLDDLLIHSEWTRQHGWRTA-KRPGLDYFLGYL 213


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +1

Query: 109 CLPSSSPCCALASNATLAPXTDDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEA 288
           CL SS PC +  +  TL P T   L            YETA+A   E+L  +  ++++E 
Sbjct: 114 CLSSSPPCTSALTEITLLPPTFHNLIPS------SSSYETAVA---EFLHME--DLLQEN 162

Query: 289 VKRLIE 306
           V R +E
Sbjct: 163 VSRELE 168


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +2

Query: 632 SDDRIIYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--EYNSVMTL 766
           SDDR+  GD+     +  +Y++     +MYE   ++  Y     YN V+ L
Sbjct: 84  SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDVLAL 134


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 427 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 519
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 645 IRSSLEPFVLSSFRYCLSSVDMILK*TLLFSKHG 544
           I SS  P+V S   +C +  D +++  L FSK G
Sbjct: 11  IASSALPYVRSPPAWCKADADSVVEQILKFSKKG 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,502,969
Number of Sequences: 5004
Number of extensions: 73235
Number of successful extensions: 277
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)