Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_P12
(923 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 1.3
02_01_0191 - 1289442-1289875,1290073-1290154,1291046-1291090,129... 30 2.3
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 3.9
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 29 5.2
08_02_0272 + 15189617-15190276,15190361-15191107 29 5.2
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 29 5.2
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 28 9.1
06_01_1082 - 8847795-8848033,8848511-8848724 28 9.1
03_02_0950 + 12661008-12662312,12662403-12662576 28 9.1
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 403 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 507
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>02_01_0191 -
1289442-1289875,1290073-1290154,1291046-1291090,
1291274-1291357,1291428-1291631,1291735-1291894,
1292042-1292292
Length = 419
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = +2
Query: 521 RKSPGSLPPCLENNRVYFKIMSTEDKQYLKLDNTKGSS--DDRIIYGDS-----TADTFK 679
R+ P + PP +++ ++ E + + D + S+ DD +IY + T T K
Sbjct: 133 RRDPQTGPPQYQSSTIFENANPEEVRDFFGDDQFRMSNKWDDMLIYHKTLEECQTTGTMK 192
Query: 680 HHWYLEPSMYESDVMFFVYNREY 748
HW + + FF +REY
Sbjct: 193 VHWVRKVDYLDMIFPFFCSDREY 215
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 471 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 385
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 29.1 bits (62), Expect = 5.2
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = -3
Query: 561 LFSKHGGKLPGDFLAGFVFGVTECNFVVVLLVDQLEGVMVPFVYELDSLLGEDHSKLDGE 382
LFSK+ G+ P + GF F VTE + L D LE E D+ G K
Sbjct: 1304 LFSKYFGEAPIMHIPGFTFPVTE-----LFLEDILEKTRYKINSERDNFQGNSRRKRLAS 1358
Query: 381 VRFD 370
V+ D
Sbjct: 1359 VKSD 1362
>08_02_0272 + 15189617-15190276,15190361-15191107
Length = 468
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 724 HDVAFVHGGLKVPVVFEGVSGAITVDDTVITRTFRVIELQVLFVLGGHDLEVNSVVF 554
HD++F HG L++P + VDDT + F ++ + L G + EV + VF
Sbjct: 300 HDISFRHGALRIP--------RLAVDDTTEHKLFSLMAFEQLHGAGAN--EVTAYVF 346
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 190 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 360
+LY+ +++ G Y+ A+ S + G +KE K L+E+ T++ +L T G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550
Query: 361 KEIVK 375
+ +
Sbjct: 551 DPMTR 555
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = +1
Query: 379 YFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVFGK 558
+F + RV+ + +KL+ +RD K I++QN +G + S++V++ F +G
Sbjct: 315 FFVLNARVL---ECIKLVARRDKCEAKWIEKQNQKLQLYG----RASRRVTFDFQADYGV 367
Query: 559 QQSLLQDHV 585
+ H+
Sbjct: 368 DSLVHMKHI 376
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 686 WYLEPSMYESDVMFFVYNREYNSV 757
W + Y DV+ F YN+EY+ V
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDV 82
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 175 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 276
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,177,578
Number of Sequences: 37544
Number of extensions: 485743
Number of successful extensions: 1519
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -