Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_P04
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0471 + 34169562-34169892,34170121-34170347                       31   0.97 
02_04_0382 - 22501041-22501279,22501717-22501810                       29   6.8  

>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +2

Query: 176 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 325
           Y P    P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = +2

Query: 101 KFFMIFVLALLAMANAQVVINDRNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVD 280
           K  ++F L L A   A       +G  P ++ P   +PP    P+   Y+P  +  YY D
Sbjct: 11  KALLVFALLLAAAFVASAEQTHDDGDNPPES-PDHEDPP----PSPEYYDPPPSPDYY-D 64

Query: 281 RPQGRPYFKPTPFP 322
            P    Y+ P P P
Sbjct: 65  PPHSPDYYDPPPSP 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,713,281
Number of Sequences: 37544
Number of extensions: 317374
Number of successful extensions: 673
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)