Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_P03
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0070 + 13045122-13045715                                         36   0.044
05_07_0307 - 29111643-29112104,29112222-29113214                       31   1.6  
11_01_0701 - 5774234-5774404,5774456-5774456,5774558-5774763,577...    29   6.6  

>07_03_0070 + 13045122-13045715
          Length = 197

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
 Frame = +2

Query: 170 VFLPNFWMKLVRPHPKQLPNIVHFHCSM--EMTKYDIKNYLEKIYEVPVVDVRTKINMGK 343
           +   N  +KL+ P P  L ++  F        +K DI+  LE +Y   V +VRT +NM +
Sbjct: 10  IHFANLPLKLMLP-PAPLSSVQEFAVKTVPSASKVDIRRCLESMYGFSVAEVRT-LNM-E 66

Query: 344 FKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKS--INEEEEHAKSLDESKK 505
            KK     ++  + D K A+VTL   +    PDLF     + E E  A +    +K
Sbjct: 67  GKKLRRGPFLAAKPDYKKAYVTLRAPLPVS-PDLFPIGLVLGERERKASAAAARRK 121


>05_07_0307 - 29111643-29112104,29112222-29113214
          Length = 484

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
 Frame = +2

Query: 152 GNPQLRVFLPNFWMKLVRP--HPKQLPNIVHF-HCSMEMTKYDIKNYLEKIYEVPVVDVR 322
           G  ++ VF  N+  +L +    P ++   +H  +C+ E  +    NY    Y V   ++ 
Sbjct: 349 GEERIIVFTTNYKERLDQALMRPGRMDMHIHMGYCTPEAFRILASNYHSIDYHVTYPEIE 408

Query: 323 TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESK 502
             I         V   +++ DD+ VA + L + +  K  D  E     E + A    E  
Sbjct: 409 ELIKEVMVTPAEVAEALMRNDDIDVALLGLLELLKSKIKDASE--TKAESKDANKQTEEN 466

Query: 503 KNFRKYIDHNKSRPD 547
           K+ +   + N S  D
Sbjct: 467 KDSKAMENKNDSSTD 481


>11_01_0701 -
           5774234-5774404,5774456-5774456,5774558-5774763,
           5775157-5775303,5775423-5775628,5776391-5776580
          Length = 306

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +2

Query: 377 KEDDVKVA-FVTLPKTMTFKYPDLFEKSINEEE---EHAKSLD--ESKKNFRKYIDHN 532
           KED+   A  +  P      YPDLFE+    E     H+ S++  + KK   +Y  HN
Sbjct: 42  KEDEETTADLLDAPPVFLIDYPDLFERGWGWERLFPYHSSSVEWPQFKKYLEEYSSHN 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,601
Number of Sequences: 37544
Number of extensions: 218509
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)