Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_P03
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical ...    95   5e-20
Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    29   4.5  
Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical
           protein T08B2.8 protein.
          Length = 159

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 54/138 (39%), Positives = 84/138 (60%), Gaps = 9/138 (6%)
 Frame = +2

Query: 119 MSTRXYPIYQRGNPQLRVFLPNFWMKLVRPHP---KQLP-NIVHFHCSMEMTKYDIKNYL 286
           M++R   ++Q GNPQ RVFLP+FWM +V        +LP N V F     M+++DI+ YL
Sbjct: 1   MTSRLARLWQPGNPQRRVFLPDFWMAVVESPSVGRNRLPRNCVKFEVDPRMSRHDIREYL 60

Query: 287 EKIYEVPVVDVRTKINMGKF----KKD-VVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFE 451
            KIY++PV DVRT++ MG      K D   K  + K++D K+A+V + K   F YP +FE
Sbjct: 61  TKIYDLPVRDVRTEVQMGDITWNSKLDHQYKKAMWKDEDKKIAYVFMSKGFEFSYPQMFE 120

Query: 452 KSINEEEEHAKSLDESKK 505
            ++ E+ E  K++ + ++
Sbjct: 121 -ALEEDLELVKAMKQQEE 137


>Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical
           protein F59D12.3 protein.
          Length = 356

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 323 TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSL 490
           TKIN+GK K  V   +  K++  K AF    ++  F+  + FEK +     + +S+
Sbjct: 33  TKINLGKVKTTVEAPFKNKKNRKKSAFPNKQRSRFFQTFNRFEKLLRGNYNYLRSI 88


>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 227 NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 364
           N + F  S +  KY IK+ + K+Y V  + V T I   + KK  V+
Sbjct: 85  NTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVR 130


>Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical
           protein F55D12.3 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = +2

Query: 197 LVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVI 376
           ++  + K+  N +  +C    TKY    Y+E I  + V+ ++TK ++  F       +VI
Sbjct: 285 ILTEYQKKYSNTLFHYCRTVNTKYGPSRYIEIISLINVI-LKTKSDVDNFSNIF---HVI 340

Query: 377 KEDDVK 394
           + +DVK
Sbjct: 341 QPEDVK 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,415
Number of Sequences: 27780
Number of extensions: 221359
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)