Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_P01
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   4.9  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    26   8.5  

>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 467 LSFFDSFISHGLGPRLFSQLSISNFCISSYAVSKETVFSL 348
           +S+F + ++H   P +F+QLS  + C  +    K+  ++L
Sbjct: 441 ISYFSNKLTHQTLPNVFTQLSELSKCHEASLAEKQLTYNL 480


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 191 INVFRMLSTRAVNPVVIIFSLF 126
           +N FR+L  R   PVVII S F
Sbjct: 39  VNAFRLLMRRFAQPVVIITSGF 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,380
Number of Sequences: 5004
Number of extensions: 46687
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)