Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_O23
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    30   2.6  
Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical p...    29   5.9  

>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
            class iii (c) protein1 protein.
          Length = 1400

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 434  ICKSAFVFSSTVFALVSIWKSDICWFFKPVMFKFLKRITIP-ASLGAITSNDV 279
            ICK+   + +++ A   + K+ +C F +   +K  + IT P  ++GAI +  +
Sbjct: 1002 ICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSI 1054


>Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical
           protein T05E12.1 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -2

Query: 368 ICWFFKPVMFKFLKRITIPASLGAITSNDVTTSGSIGHMSYCGIPLLVFSKNC 210
           I +    +M+  L  +T+P  +    S  + +SG   H  Y G PL+  +  C
Sbjct: 43  ISFSLSAMMYSVLDFLTLPIFVCKERSFCIVSSGMFTHDKYIGFPLIATTSGC 95


>Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical
           protein F15A4.3 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 458 NSITMSPTICKSAFVFSSTVFALVSIWKSDICWFFKPVMFKF 333
           N   +  T  +S F+ S  VF  + +W+ ++ W  + V  KF
Sbjct: 192 NRTPLLQTCLQSIFIGSVAVFGYIMLWRVNLAWRNRIVNLKF 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,929,695
Number of Sequences: 27780
Number of extensions: 407452
Number of successful extensions: 1087
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)