Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_O22
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    29   0.85 
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    29   0.85 
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    28   2.0  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   4.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.0  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    26   7.9  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 173 VQTTVKKIHAYSHHLFALRTL 235
           ++  VKKIH ++H +F LRTL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = +1

Query: 226 KNTEHRARHAGKCACCPACVTLLDEGA--TCKIYSKELG-ETPSAVCKKPLKCIKRVCTK 396
           +NT +  R  G  A   A ++L D  A  + + +S+ L   +PS + K  L+  + +C+ 
Sbjct: 356 QNTTYNERQCGIFAVYAAILSLDDSLAPESWRTFSRLLNLPSPSQLMKSDLELGQTLCSI 415

Query: 397 IM**FSLAGKYKLSILLSRPVRNIICVWSE 486
           +     +AG+  L I   +  + I+C +SE
Sbjct: 416 VSTYLDIAGQSLLRIYGRQAKKLIVCSFSE 445


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +1

Query: 76  TRNVFKNFKMKTLIFILLVACVASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHA 255
           +RN F+ FK      +L    +AS   G  +   D+  +   + PPL  PK+  HR   A
Sbjct: 298 SRN-FEKFKKSNKKTVLFTTDIASR--GLDIPNVDFVLQ---LDPPLD-PKSFSHRCGRA 350

Query: 256 GKCACCPACVTLLDEG 303
           G+       + LL++G
Sbjct: 351 GRAGRAGVAIVLLNDG 366


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = +2

Query: 152 RTVLWYVVQTTV-----KKIHAYSHHLFAL 226
           R + WY + TT+     + I+AY HHLF +
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFIM 138


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 487  FHSIHKLYFEQVVIEVLKAYIFLLMKTTT 401
            + S HKL+ +  + ++LKA  F+L  T T
Sbjct: 1182 YDSHHKLWIQDRLHDILKALFFILKDTPT 1210


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 75  YEKRIQKFQNENVDFYIAGGMRCVSSVRCFGMWY 176
           + +++  F   ++ F + G +  V+S   FG+WY
Sbjct: 61  FRRQLSLFGIFSISFSVLGMLPSVASTLVFGLWY 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,142
Number of Sequences: 5004
Number of extensions: 59129
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)