Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_O19
         (1220 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   8.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.2  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect(2) = 1.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 985  PXPPPXPPPXPT 1020
            P P P PPP PT
Sbjct: 234  PLPAPPPPPPPT 245



 Score = 23.4 bits (48), Expect(2) = 1.0
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +1

Query: 919  PXPTXXTLXXSAXXTXSXX*TYPXPPPXPPP 1011
            P P+      +A  T       P PPP PPP
Sbjct: 167  PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 985  PXPPPXPPPXPTXXXXRXXXPPPR 1056
            P PPP PPP  +    R   P P+
Sbjct: 775  PPPPPPPPPAVSAGGSRYYAPAPQ 798


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
            Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.0 bits (47), Expect(2) = 8.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 985  PXPPPXPPP 1011
            P PPP PPP
Sbjct: 306  PPPPPPPPP 314



 Score = 21.4 bits (43), Expect(2) = 8.8
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = +1

Query: 991  PPPXPPPXPTXXXXRXXXPPP 1053
            PPP PPP           P P
Sbjct: 307  PPPPPPPPSNDFWKDSNEPAP 327


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 985  PXPPPXPPPXPTXXXXRXXXPPP 1053
            P  PP PPP P         PPP
Sbjct: 6    PGNPPPPPPPPGFEPPSQPPPPP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,822
Number of Sequences: 5004
Number of extensions: 20438
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)