Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_O16
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    30   0.50 
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    28   1.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   3.5  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    27   4.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   6.1  
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    26   8.1  

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +3

Query: 540 EYSQNPQFKAHVINLMTSLNLAVNNLNQPEIVAAM 644
           EY  + +F+ H++++M S   + + + +PE++A M
Sbjct: 465 EYRLHEEFQPHILDMMDSSTSSPSYITEPELIALM 499


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +3

Query: 330 GLATCGGVG-IRTW*TRSPGSRGER-YTQFKNHGPPX---NANSFATGSELLRRLFNTYP 494
           G+ TCG  G I  W  RS      R +TQ             N FATGSEL R L +   
Sbjct: 69  GVITCGSEGEIHLWDIRSQAKSAVRSWTQQSTPFTCIALNKKNQFATGSELTRSLASVQL 128

Query: 495 -DTKEYFKMVRK 527
            D +   K++R+
Sbjct: 129 WDVRSEQKLIRQ 140


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 157 TNLIIDATNSLLYPKSYVS*GSLLVNTLICDV 252
           ++++ D+TNS+LYP S     S + NT+  DV
Sbjct: 702 SDVVADSTNSILYPTST---ASSVANTIASDV 730


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 426 PPXNANSFATGSELLRRLFNTYPDTKEYFKMVRKLPEEEYSQNPQFK 566
           P    NS A  S+  +  F   P  K YF     +PE+     P+FK
Sbjct: 117 PHIGWNSCAVRSDTSKEFFGMRPHDKFYFVHSYMIPEKGLILPPEFK 163


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 52  VPPHGSTAPRVSTHNTKVIVFILSVKYARENLSLTTNLIID 174
           V P+  + P++  H   +  F L V+YARE  SL+   I++
Sbjct: 70  VTPYSQSLPQIVYHQKTI--FDLIVQYAREGDSLSLQPILE 108


>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 364 VRIPTPPHVAKPGTHDLICYFSVFQ*CSRQRGQVKQFSHHK 242
           + +PTP  +A   T  +I  +S+F+  SRQ   ++  S  K
Sbjct: 12  LNLPTPISLAPYFTSSIILKYSMFRIASRQTRNLRALSSSK 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,609
Number of Sequences: 5004
Number of extensions: 66056
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)