Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_O12
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    27   3.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   3.7  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   6.4  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   6.4  

>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 206 PYCQPEQIHIAFGEKTNDIK-ITWSTFNDTQESTVEYGE 319
           P+ Q EQ+H+   +KTN+ K   +  F+D  ++   Y E
Sbjct: 345 PFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 706  SGGQRLDLSHELVSDPSVLRVH 641
            SGGQRL L     +DP+ L +H
Sbjct: 1142 SGGQRLSLDRPPTNDPASLMIH 1163


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 242 GEKTNDIKITWSTFNDTQESTVEY 313
           GEK N ++  W+T  DT+ STV +
Sbjct: 554 GEKCNSVRYLWNTI-DTEFSTVSH 576


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 248 KTNDIKITWSTFNDTQESTVEYGEGIMEKEATGSA 352
           K NDI++ W+T    + + V+  E + EK    +A
Sbjct: 62  KKNDIRLFWNTQGFVRLAIVQLEENVSEKSVRSAA 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,589,937
Number of Sequences: 5004
Number of extensions: 74788
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)