Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_O04
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    69   7e-13
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   3.5  

>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 69.3 bits (162), Expect = 7e-13
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +1

Query: 304 YGASRE-RNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILR 480
           Y A R  R     + F++  DLS L++WN K + +YL A Y T  +E NQVV+WDKI+  
Sbjct: 58  YHAFRNVRQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSS 117

Query: 481 GENAVLDFKNMNTK---YYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFK 651
            E + +  K+  +    + F +  N  +G  N T TL W + P  G L      G  S++
Sbjct: 118 PEESKMFMKDTLSNIQAHPFNEYSNQFEG-KNATYTLHWTVSPKMGFLS--WGAGPGSYE 174

Query: 652 FP 657
            P
Sbjct: 175 IP 176


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 595 IPNAGLLPNIQALGQHSFKFP-IEYTQTXXXXXXXXXXXXAYLSSVGK*HD 744
           IP A L+P  + L   S++FP ++Y+QT             + S+V + H+
Sbjct: 63  IPRAWLIPFHEFLNNRSYRFPKLDYSQTPIRLAIRSGKKSVHKSAVVRHHN 113


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  LXGNSLRXLDSMQTSTKNKTSKLRK 97
           L GNS     S+QTS+ NK+S L K
Sbjct: 646 LAGNSSNVSSSLQTSSSNKSSLLTK 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,656
Number of Sequences: 5004
Number of extensions: 51122
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)