Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_N23
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    44   4e-05
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    30   0.51 
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    27   4.7  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   8.2  

>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 375 GITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLN 515
           G+ + L  +P+IG   E  GF  LF+ F P  I+FLR VP +G  ++
Sbjct: 73  GLLLTLFHFPIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIGPYID 119



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/65 (21%), Positives = 28/65 (43%)
 Frame = +2

Query: 167 TDTQKLGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQRTFFFFFQRHK 346
           +D QK+GVG                      ++GN+L + G   + G  ++  FF ++ +
Sbjct: 4   SDLQKIGVGTTALGFLFMIMGIFMFFDGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKDR 63

Query: 347 LKASV 361
           +  S+
Sbjct: 64  MLGSI 68


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = -3

Query: 472 MAEGRNPL-NNSRKPYISAIIPIMGQPS---STMVMPXKEGYGR-LQLVPLEEEEKRPLD 308
           MA G  P+ NNS  P    +IP +G+P+   ++ +    E Y + L L P E+ E R ++
Sbjct: 381 MAAGLIPVVNNSGGPKFDIVIPWIGKPTGFHASTISEYAEAYHKALTLSPQEQLEMR-IN 439

Query: 307 ADHAC 293
           A  AC
Sbjct: 440 ARSAC 444


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 336 WKKKKNVLWMPITHVRPLMNRILPMARR 253
           W KK +  W+P  +V   +N I P+ARR
Sbjct: 522 WHKKDDTFWVPKANV--FINFISPIARR 547


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 466 EGRNPLNNSRKPYISAIIPIMGQPSSTMVMP 374
           +G+ PLN   K  I +I+     PSS+++ P
Sbjct: 137 KGKTPLNEIEKEGIISILNKSASPSSSVISP 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,410
Number of Sequences: 5004
Number of extensions: 44208
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)