Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_N21
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    87   3e-18
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   3.6  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    27   4.7  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.3  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    26   8.3  

>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 62/172 (36%), Positives = 86/172 (50%), Gaps = 6/172 (3%)
 Frame = +3

Query: 174 MCGIWATFGVTGGLT---PTCVKCFSNIRHRGPDAWRIEQDAREPLAILGFQRLAIVDGR 344
           MCGI A   V   +    P  +     +RHRGPD W     A     IL  +RLAIV   
Sbjct: 1   MCGILAVHHVAEDIEAFKPKALHLSKQLRHRGPD-W--SGKAIRNQTILCHERLAIVGVE 57

Query: 345 HGMQPMRLHCYPRTTLICNGEIYNCKRLQK--QHEFQYETNCDVEAIIHLYQRFGIEEAV 518
            G QP+ +    +  L  NGEIYN  +L++  +  ++++T  D E I++LY+  G     
Sbjct: 58  SGAQPL-VSDDGKLVLTVNGEIYNHLKLRENLKGNYKFKTYSDCEVILYLYREHG-PACA 115

Query: 519 TNLDGVFSFCLVDGEKNKVYIARDPYGVRPLF-SFHDPENDVLAICSEAKGL 671
             LDG+FS+ L D +K+KV  ARDP G+  L+  F     D     SE K L
Sbjct: 116 NMLDGMFSWVLYDQDKDKVVAARDPIGITTLYQGFSSDSPDTAYFASELKAL 167


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 335 HDSETLKSENSQRLSSILLNSPRVRT 258
           HD+E  K  N  R +S L+ +PRV T
Sbjct: 745 HDNEVKKENNRIRNASSLMENPRVST 770


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 566 LLTVDKAKRKNPVKVSDGFFYAESLIQMYD 477
           +L  DK   ++  +   GFFY   L+Q Y+
Sbjct: 162 ILYADKESYRHMCRFESGFFYRHPLVQKYE 191


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 745 STLVSYPERIXPSVEFGLPFCF 680
           S LV YPE +  S+E  +PF F
Sbjct: 528 SNLVPYPENLIASIERLIPFIF 549


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 465 DVEAIIHLYQRFGIEEAVTNLDGVFSFCLVDGEKNK-VYIARD 590
           D +A+  +Y++FGI+EA+   +  F    V+G   K +YI+ D
Sbjct: 472 DDQALEKIYKKFGIDEAIIKKNQFF-VRNVNGVPTKAIYISND 513


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 399 NGEIYNCKRLQKQHEFQYETNCDVEAIIHLYQRFGIEEAVT 521
           N E     R  K+H+ ++ET CD +  +  ++R  IE  V+
Sbjct: 45  NQETIENFRQAKEHKMRFETECDQK--LRNWKRLAIEREVS 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,439,937
Number of Sequences: 5004
Number of extensions: 71015
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)