Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_N16
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   1.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    28   1.9  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    28   1.9  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.5  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   2.5  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   7.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   7.7  

>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -2

Query: 270 RYHSLCQFYNIHHQ--CLVGSHLG 205
           +Y++ C FYNI H   C  G  LG
Sbjct: 35  KYYNFCPFYNIQHNYTCQTGDPLG 58


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 821 STRTVNESGSSSSKRSCQYPQ*SMSAFVLH 732
           +T TV+ESGSSS+  +  YP  ++S    H
Sbjct: 592 TTSTVSESGSSSASITSTYPSSTLSMTTSH 621


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 671  VNAILSCGFRINEAMLHLCYVNFLQHFHIHKHFRVY 564
            ++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 928  ISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 183 QKKILSFFQDVSQLNTDDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 347
           + K+     D + L  DD      KD+ ++ +N  +Y NK  ++ F  + +  F P
Sbjct: 617 EMKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 668 SQXKTTTSFTKPIILTPFLYNNEEQRLTYFTEDIGMNAYYYYFHSHL 808
           S   T +  ++   L P   + + Q++ Y  ++   N+Y  Y HSH+
Sbjct: 293 SYSSTDSELSEEAFLLPAQASRKTQKIHYINDNDPSNSYSSYQHSHV 339


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 713  TPFLYNNEEQRLTYFTEDIGMNAYYYY 793
            TPF+Y+ ++    YF E +    Y Y+
Sbjct: 1020 TPFIYSEQQTAADYFGEQLVKAGYNYH 1046


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 195 LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 287
           L+FF  Q+V Q+N +DEY +   + D E  +DN
Sbjct: 49  LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,984
Number of Sequences: 5004
Number of extensions: 64968
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)