Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_N14
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0655 + 24761323-24761424,24761565-24761675,24762361-247624...    97   2e-20
09_04_0582 - 18694158-18694256,18694522-18694560,18695564-186957...    31   1.6  
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     29   6.5  

>02_04_0655 +
           24761323-24761424,24761565-24761675,24762361-24762472,
           24763049-24763113,24763727-24763804,24764550-24764624,
           24764747-24764899,24764988-24765122,24765325-24765495
          Length = 333

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 3/176 (1%)
 Frame = +2

Query: 335 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDT-NALSG-FKAD-EYVVKAQILAGGRGK 505
           R LN+ E+   +L+ KY +++       S  +  N L   F ++ E VVK+QILAGGRG 
Sbjct: 26  RRLNIHEYQGAELMGKYGINVPRGAAAGSVEEVKNTLKNVFPSEKEIVVKSQILAGGRGL 85

Query: 506 GHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRETY 685
           G F +G +GGVH+ K  ++   LA  M+G  L+TKQT  +G +V+KV + E +++  E Y
Sbjct: 86  GTFKSGLQGGVHIVK-AEEAESLAAKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144

Query: 686 FSYCNGEKXXXXXXXXXXXXRYGYRGSG*KNPHLVKTVPVDIFEGISDXVANEIXE 853
           F+                           K P ++  VP+D+F+GI+D  A ++ +
Sbjct: 145 FAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMIIKVPIDVFKGITDDDAAKVVD 200


>09_04_0582 -
           18694158-18694256,18694522-18694560,18695564-18695707,
           18695783-18695914,18696882-18697103,18697496-18697963
          Length = 367

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +3

Query: 720 AAIVASPAGGMDIEAVAEKTHIW 788
           A IVA P GG D EAV E+T  W
Sbjct: 122 ARIVADPGGGGDAEAVDEETRRW 144


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 296 LASSTYC-PRVISTRHLNLQEHHSKDLLRKYQVSIQDF 406
           LA+++ C PR +   H+ ++ HH+ D+ +     +Q F
Sbjct: 263 LATTSRCKPRAVQAAHIRIKGHHASDIYQVGHAILQAF 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,961,005
Number of Sequences: 37544
Number of extensions: 344690
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)