Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_N12
(940 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 41 0.001
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 41 0.001
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 36 0.042
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.22
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.22
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.22
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.6
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 30 2.1
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 30 2.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 2.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 2.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 2.7
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 4.8
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 6.3
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 6.3
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/59 (40%), Positives = 24/59 (40%)
Frame = -2
Query: 648 GGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXPXXGXGRPGG 472
GG RG G G G G GPPG G PP G PP P G G PGG
Sbjct: 160 GGGDPRGPPGGMGGPPGHGGMGGPPG-HGGQGGPPGHGGMGGPPPGQGGP-GGPGGPGG 216
Score = 31.5 bits (68), Expect = 0.90
Identities = 23/71 (32%), Positives = 24/71 (33%)
Frame = -2
Query: 684 LRGXGXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXX 505
L G G + GG G G G G GPPG G PP G P
Sbjct: 157 LMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGP----- 211
Query: 504 XPXXGXGRPGG 472
G G PGG
Sbjct: 212 ---GGPGGPGG 219
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/59 (40%), Positives = 24/59 (40%)
Frame = -2
Query: 648 GGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXPXXGXGRPGG 472
GG RG G G G G GPPG G PP G PP P G G PGG
Sbjct: 440 GGGDPRGPPGGMGGPPGHGGMGGPPG-HGGQGGPPGHGGMGGPPPGQGGP-GGPGGPGG 496
Score = 31.5 bits (68), Expect = 0.90
Identities = 23/71 (32%), Positives = 24/71 (33%)
Frame = -2
Query: 684 LRGXGXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXX 505
L G G + GG G G G G GPPG G PP G P
Sbjct: 437 LMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGP----- 491
Query: 504 XPXXGXGRPGG 472
G G PGG
Sbjct: 492 ---GGPGGPGG 499
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 35.9 bits (79), Expect = 0.042
Identities = 38/140 (27%), Positives = 40/140 (28%), Gaps = 8/140 (5%)
Frame = -2
Query: 762 GXGPXXXPSRGXXPXXXXXP*GFXXLLRGXGXXGKXXK-GGXXSRGXAXGX--GPXTGXG 592
G G PS P P G L G G+ GG S G + G G T
Sbjct: 128 GGGCQCSPSSNTCPPGPRGPPGQAGLDGLPGAPGQPGSNGGAGSNGASEGSAGGCKTCPA 187
Query: 591 XXXGPPGTRXXLGXPPXLGXTXTPPXXXXXPXXGXGRPGG-----GXXXXXHXXGXPXXN 427
GPPG G P G P G P G G G P N
Sbjct: 188 GPPGPPGPAGQAGRPGNDGQPGAPSFGGGVGAPGAPGPAGDAGSPGQPGAPGQPGRPGKN 247
Query: 426 XXYXXXXPXPPXPXXLPXXP 367
P PP P P P
Sbjct: 248 AQGGSSRPGPPGPAGPPGPP 267
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/78 (28%), Positives = 22/78 (28%), Gaps = 1/78 (1%)
Frame = -2
Query: 672 GXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTP-PXXXXXPX 496
G G G G G G G PG G P G TP P
Sbjct: 262 GPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQPGPDGQPGAPGNDGTPGTDAAYCPC 321
Query: 495 XGXGRPGGGXXXXXHXXG 442
G G GGG H G
Sbjct: 322 PGRGGGGGGYGAGAHHGG 339
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.22
Identities = 27/79 (34%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Frame = +2
Query: 470 PPPGLP---------XPXXGXXXXXGGVXVXPKXGGXPRXXLVPGGPXXXPXPVXGPXPW 622
PPPGLP P G GG P GG P + GGP P P G P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP---ISGGPPPPPPPPGGCPPP 771
Query: 623 AXPLEXXPPFXXFPXXPXP 679
P PP F P P
Sbjct: 772 PPP----PPPGGFKGGPPP 786
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +2
Query: 470 PPPGLPXPXXGXXXXXGGVXVXPKXGGXPRXXLVPGG-PXXXPXPVXGPXPWAXPLEXXP 646
PP GLP G + P GG P PGG P P P G P P
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP-PPPP 789
Query: 647 PFXXFPXXP 673
P P P
Sbjct: 790 PGMFAPMAP 798
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.22
Identities = 27/79 (34%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Frame = +2
Query: 470 PPPGLP---------XPXXGXXXXXGGVXVXPKXGGXPRXXLVPGGPXXXPXPVXGPXPW 622
PPPGLP P G GG P GG P + GGP P P G P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP---ISGGPPPPPPPPGGCPPP 771
Query: 623 AXPLEXXPPFXXFPXXPXP 679
P PP F P P
Sbjct: 772 PPP----PPPGGFKGGPPP 786
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +2
Query: 470 PPPGLPXPXXGXXXXXGGVXVXPKXGGXPRXXLVPGG-PXXXPXPVXGPXPWAXPLEXXP 646
PP GLP G + P GG P PGG P P P G P P
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP-PPPP 789
Query: 647 PFXXFPXXP 673
P P P
Sbjct: 790 PGMFAPMAP 798
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.22
Identities = 27/79 (34%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Frame = +2
Query: 470 PPPGLP---------XPXXGXXXXXGGVXVXPKXGGXPRXXLVPGGPXXXPXPVXGPXPW 622
PPPGLP P G GG P GG P + GGP P P G P
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP---ISGGPPPPPPPPGGCPPP 354
Query: 623 AXPLEXXPPFXXFPXXPXP 679
P PP F P P
Sbjct: 355 PPP----PPPGGFKGGPPP 369
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +2
Query: 470 PPPGLPXPXXGXXXXXGGVXVXPKXGGXPRXXLVPGG-PXXXPXPVXGPXPWAXPLEXXP 646
PP GLP G + P GG P PGG P P P G P P
Sbjct: 314 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP-PPPP 372
Query: 647 PFXXFPXXP 673
P P P
Sbjct: 373 PGMFAPMAP 381
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 30.7 bits (66), Expect = 1.6
Identities = 29/115 (25%), Positives = 32/115 (27%), Gaps = 1/115 (0%)
Frame = -2
Query: 672 GXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXPXX 493
G G G G G GPPG G P G TP
Sbjct: 159 GPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPG 218
Query: 492 GXGRPG-GGXXXXXHXXGXPXXNXXYXXXXPXPPXPXXLPXXPPDREP*METXXG 331
G PG G G P + P PP P P PD P ++ G
Sbjct: 219 APGEPGDSGPPGPPGPPGAPGND-----GPPGPPGPKGAPG--PDGPPGVDGQSG 266
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 30.3 bits (65), Expect = 2.1
Identities = 28/108 (25%), Positives = 29/108 (26%), Gaps = 1/108 (0%)
Frame = -2
Query: 672 GXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXPXX 493
G G G G G GPPG G P G TP
Sbjct: 154 GPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPG 213
Query: 492 GXGRPG-GGXXXXXHXXGXPXXNXXYXXXXPXPPXPXXLPXXPPDREP 352
G PG G G P + P PP P P PD P
Sbjct: 214 APGEPGDSGPPGPPGPPGAPGND-----GPPGPPGPKGAPG--PDGPP 254
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 30.3 bits (65), Expect = 2.1
Identities = 28/108 (25%), Positives = 29/108 (26%), Gaps = 1/108 (0%)
Frame = -2
Query: 672 GXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXPXX 493
G G G G G GPPG G P G TP
Sbjct: 154 GPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPG 213
Query: 492 GXGRPG-GGXXXXXHXXGXPXXNXXYXXXXPXPPXPXXLPXXPPDREP 352
G PG G G P + P PP P P PD P
Sbjct: 214 APGEPGDSGPPGPPGPPGAPGND-----GPPGPPGPKGAPG--PDGPP 254
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/69 (34%), Positives = 25/69 (36%)
Frame = -2
Query: 678 GXGXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXP 499
G G G +GG G A GP G G PGT G P G PP P
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPGP-AGPAGNDGAPGT----GGPGPAGPKG-PPGAAGAP 258
Query: 498 XXGXGRPGG 472
G PGG
Sbjct: 259 -GADGNPGG 266
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/69 (34%), Positives = 25/69 (36%)
Frame = -2
Query: 678 GXGXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXP 499
G G G +GG G A GP G G PGT G P G PP P
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPGP-AGPAGNDGAPGT----GGPGPAGPKG-PPGAAGAP 258
Query: 498 XXGXGRPGG 472
G PGG
Sbjct: 259 -GADGNPGG 266
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/69 (34%), Positives = 25/69 (36%)
Frame = -2
Query: 678 GXGXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXP 499
G G G +GG G A GP G G PGT G P G PP P
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPGP-AGPAGNDGAPGT----GGPGPAGPKG-PPGAAGAP 258
Query: 498 XXGXGRPGG 472
G PGG
Sbjct: 259 -GADGNPGG 266
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/69 (34%), Positives = 25/69 (36%)
Frame = -2
Query: 678 GXGXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXP 499
G G G +GG G A GP G G PGT G P G PP P
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPGP-AGPAGNDGAPGT----GGPGPAGPKG-PPGAAGAP 258
Query: 498 XXGXGRPGG 472
G PGG
Sbjct: 259 -GADGNPGG 266
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -2
Query: 699 GFXXLLRGXGXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPG 571
G+ + G G G GG G G GP G G GP G
Sbjct: 195 GYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGG 237
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.7 bits (61), Expect = 6.3
Identities = 29/106 (27%), Positives = 30/106 (28%), Gaps = 2/106 (1%)
Frame = -2
Query: 663 GKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXPXXGXG 484
GK G G G +G GPPG G PP G P P G G
Sbjct: 138 GKHHSTGAPPSGGPPGPFDPSGAPPSGGPPGLFDPSGAPPS-GGPPGPFGPSGAPPSG-G 195
Query: 483 RPGGGXXXXXHXXGXPXXNXXYXXXXP--XPPXPXXLPXXPPDREP 352
PG G P P PP P PP P
Sbjct: 196 PPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGP 241
Score = 28.3 bits (60), Expect = 8.4
Identities = 29/109 (26%), Positives = 30/109 (27%), Gaps = 2/109 (1%)
Frame = -2
Query: 672 GXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXPXX 493
G G G G G +G GPPG G PP G P P
Sbjct: 225 GPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPS-GGPPGPFDPSGAPPS 283
Query: 492 GXGRPGGGXXXXXHXXGXPXXNXXYXXXXP--XPPXPXXLPXXPPDREP 352
G G PG G P P PP P PP P
Sbjct: 284 G-GPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGP 331
Score = 28.3 bits (60), Expect = 8.4
Identities = 29/109 (26%), Positives = 30/109 (27%), Gaps = 2/109 (1%)
Frame = -2
Query: 672 GXXGKXXKGGXXSRGXAXGXGPXTGXGXXXGPPGTRXXLGXPPXLGXTXTPPXXXXXPXX 493
G G G G G +G GPPG G PP G P P
Sbjct: 315 GPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPS-GGPPGPFDPSGAPPS 373
Query: 492 GXGRPGGGXXXXXHXXGXPXXNXXYXXXXP--XPPXPXXLPXXPPDREP 352
G G PG G P P PP P PP P
Sbjct: 374 G-GPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGP 421
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.7 bits (61), Expect = 6.3
Identities = 24/96 (25%), Positives = 28/96 (29%), Gaps = 3/96 (3%)
Frame = -2
Query: 672 GXXGKXXKGGXXSRGXAXGXGPXTGXGXXX--GPPGTRXXLGXPPXLGXTXTPPXXXXXP 499
G G+ G + A G G GPPG G G P P
Sbjct: 223 GNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGP 282
Query: 498 XXGXGRPGG-GXXXXXHXXGXPXXNXXYXXXXPXPP 394
G+PGG G G P + Y P P
Sbjct: 283 PGNDGQPGGPGQPGGPGQDGGPGTDAAYCPCPPRTP 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,873,024
Number of Sequences: 27780
Number of extensions: 195275
Number of successful extensions: 885
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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