Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_N09
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 95 9e-21
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 34 0.024
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 32 0.096
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 32 0.13
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 31 0.29
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 30 0.39
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 30 0.51
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 29 1.2
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 28 2.1
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 2.1
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 2.7
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.7
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 27 3.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 4.8
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 27 4.8
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 6.3
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.3
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 6.3
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 6.3
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 6.3
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 6.3
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 26 8.3
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 26 8.3
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 26 8.3
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 95.5 bits (227), Expect = 9e-21
Identities = 56/180 (31%), Positives = 99/180 (55%), Gaps = 3/180 (1%)
Frame = +3
Query: 267 LQADFEGRNPEDSDFHGIKQLLRQL--FLKSNVDLGGLAQIIISQNYIGSVVKQCLXXXX 440
+ DFE +P+ DFH K LL+QL + +NV+L LA +I+SQ +GS VK
Sbjct: 69 INVDFEFFDPQPIDFHAFKNLLKQLLGYDHTNVNLSALADLILSQPLLGSTVK------- 121
Query: 441 XXXXXXXXXXXXVFGVTTVVNITKRKNEPSVAQIRE-LLTKLSQENADPRTKELIKYILA 617
+ + +V+N+ R++EP + Q+ ++++L++ N+ EL K +
Sbjct: 122 -----VDGNNSDPYAMLSVINLNTRRDEPVIKQLTSYIISRLAKSNSRLEN-ELQKLLEP 175
Query: 618 DDSQHTGLVINERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYXIWISKTYTTGES 797
+ GL++NER++N+P + P++ L E++ A +N YNF + + +S+TYT ES
Sbjct: 176 NSGSQVGLIVNERLINMPVQVIPPMYNMLLEEMQWAINENEPYNFTHYLLLSRTYTEIES 235
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 34.3 bits (75), Expect = 0.024
Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Frame = +3
Query: 144 KMPNKK----NKEIDTNSES-EKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 308
++P KK +++ +++SES E+E+++ SE+DS+ + E E +++ E + E+SD
Sbjct: 68 EVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESD 127
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 32.3 bits (70), Expect = 0.096
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 171 IDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHG 317
+ +++ E+E++ E + +FD +G E+E + D +G D D G
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEG 218
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 153 NKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPE 299
++ +E D E ++E++ + D D + DG+ GE + + E E
Sbjct: 184 DEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEE 232
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 135 YFAKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGN 248
+F+K+PN K ++ D+ S DS + +D D+ N
Sbjct: 28 FFSKIPNVKQEKSDSTLSSSSNHDSNHDTPADVDNSSN 65
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 516 KNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPA 674
KN PS + I +L+ + E+ R + LIK + D NE++ +P+
Sbjct: 15 KNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPS 67
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 30.3 bits (65), Expect = 0.39
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Frame = +3
Query: 168 EIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQAD--FEGR--NPEDSDFH--GIKQ- 326
+I T+++ +K ++ G E SD D DGNY+ K L+++ +G+ N + S+F G+ Q
Sbjct: 22 DIATDNQKDKHENVG-ENVSDED-DGNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQT 79
Query: 327 LLRQLFLK 350
LLR +F K
Sbjct: 80 LLRAIFKK 87
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.9 bits (64), Expect = 0.51
Identities = 13/56 (23%), Positives = 31/56 (55%)
Frame = +3
Query: 168 EIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQLLR 335
E+D + ++K++D + ++++ ++D N E++ + D E ED G ++ R
Sbjct: 84 EVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEEDEDESGGGRRKRAR 139
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 318 YRGSHYLLGYVLRNQPVALFHRHSCRLNQNQNLFRCL 208
+ S L Y+LR+ P + F+R+S + N N FR L
Sbjct: 9 FTSSSSLPCYILRHLPFSNFNRYSTASHDNVNAFRLL 45
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 168 EIDTNSESEKEQDS---GSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQLLRQ 338
E+D NSESE+++ G K+ D Y EK + N E + Q++ Q
Sbjct: 416 ELDDNSESEEDEHGMTIGFSKELKAPPDPQYFTEKTGATTYVNGNDESLNVSDFPQIVEQ 475
Query: 339 LFLKS 353
L S
Sbjct: 476 EELSS 480
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 153 NKKNKEIDTNSESEKEQDSGSEKDSD 230
+ NKE N+E KEQ+ E D D
Sbjct: 163 HSNNKEAHPNTEENKEQEDNEEDDED 188
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 183 SESEKEQDSGSEKDSDFDSD 242
SESE+E+ S SE D D D D
Sbjct: 239 SESEEEESSESESDEDEDED 258
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 141 AKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGI 320
A+ PN K+ K DS E D++ S GNY + EL D + + F
Sbjct: 221 AQNPNNKSDYEKEYMALRKRYDSNEEPDTEALSQGNYT-QFELSIDKADVSFSFARFLNG 279
Query: 321 KQLLRQLFLK 350
K ++++L LK
Sbjct: 280 KGIVKELQLK 289
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 486 VTTVVNITKRKNEPSVA-QIRELLTK-LSQENADPRTKELIKYILADDSQHTGLVINERI 659
++ VVN T+ K + Q+ LT+ L++ DP ++++ Y+L + S+ ++NE I
Sbjct: 239 ISHVVNATRSKKKVCKGGQVISFLTESLTKYAGDPVARKILTYLLREASRPYTKMLNEWI 298
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/55 (21%), Positives = 24/55 (43%)
Frame = +3
Query: 144 KMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 308
K+ KK D++SES + S+ + + V + E + + + DS+
Sbjct: 155 KIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSE 209
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 537 QIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPAAISVPLFA 698
+ R L LSQ N R ++ + + +Q + ++ +IL IPA I +PL A
Sbjct: 57 KFRGALNALSQLNEAQRKAGVLTFSSGNHAQ--AIALSAKILGIPAKIIMPLDA 108
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.2 bits (55), Expect = 6.3
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Frame = +3
Query: 138 FAKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEG-RNPEDSDF- 311
F + K ++ ++ + +D G + DSD ++ G + D +N S
Sbjct: 258 FMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNESEVEGIDLFEEDPNPLKNKSKSPIA 317
Query: 312 HGIKQL--------LRQLFLKSNVDLGGL 374
HG K + LR+LF+K NV L L
Sbjct: 318 HGAKYMTSTEVRNHLRRLFVKENVVLSRL 346
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +3
Query: 174 DTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQLLRQLFL 347
D E E + D ++D D D D N L + +F +K+ L QL++
Sbjct: 200 DDEVEEEDDDDDDEDEDEDEDEDNNNNNRWLLIEQYPSDIVAYENFVSLKRKLTQLYV 257
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 189 SEKEQDSGSEKDSDFDSDG-NYVGEKELQADFEGRN 293
+E + GSE DSD DSD + V +LQ + RN
Sbjct: 434 NEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRN 469
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 556 VSNSLICATLGSFFLL-VIFTTVVTPKT 476
+S+S IC+ +G FF L + +++P+T
Sbjct: 324 ISDSTICSLIGGFFFLRFVNPAIISPQT 351
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 138 FAKMPNKKNKEIDTN----SESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEG 287
F PN K+ ++ + S+S K S E +S FD G + + +ADF G
Sbjct: 85 FLAPPNDKDSPVNQSPWKRSDSSKRSSSQDEFESLFDRYGQLSLKDDGKADFRG 138
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 162 NKEIDTNSESEKEQDSGSEKDSDFDS 239
N ++ + ES +++DS S+ DS+ +S
Sbjct: 90 NSSLENDEESSQQEDSSSKSDSEEES 115
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 147 MPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGN 248
M KK+K + K +S S+ DSD DSD +
Sbjct: 58 MNKKKSKVCCIFHKQRKFDESSSDSDSDSDSDSS 91
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 186 ESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQLLRQL 341
+ E ++ G E+DS FDSD + K + +D G + ED + ++ + R+L
Sbjct: 96 DDEAKECEGEEEDSVFDSDEEH-EVKPMFSDDSG-DEEDLELANMEAMSRKL 145
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 492 TVVNITKRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQH 632
T N+ N PSV + ++ NAD + E IK ++ +S +
Sbjct: 358 TADNMNTWDNTPSVENVESANENVNNHNADEQMDEKIKSLVEGNSAY 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,297
Number of Sequences: 5004
Number of extensions: 52511
Number of successful extensions: 241
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -