Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_N08
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    81   3e-16
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    27   3.5  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 4/132 (3%)
 Frame = +3

Query: 168 NKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAA 347
           N +R  ++  T  +KSGHP +   +A    VLF   M++  + P+  + DRFILS GHA 
Sbjct: 15  NTIRTLAVDTTAHAKSGHPGAPMGLAPAAHVLFSRIMKFNPAHPKWLNRDRFILSNGHAC 74

Query: 348 PILYAAWAEAGL-FPLDELKNLRKLDSDLEGHP---TPRLNFVDVGTGSLGQGLAVAAGM 515
            + Y      G    +++LK  R++ S   GHP    P LN ++ G G LGQG+A A G+
Sbjct: 75  VLQYIMCHLLGYKLTIEDLKQFRQVGSKTPGHPETHNPDLN-IETGAGPLGQGIASAVGL 133

Query: 516 AYVGKYFDQAPY 551
           A +GK    A Y
Sbjct: 134 A-IGKAHSAAVY 144



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
 Frame = +1

Query: 559 YCLVGDGEAAEGSIWESLHFASHYKLDNLVVIFDVNRLGQSEPTSLQHQLEVYDARLKAF 738
           +C +GDG   EG   E+   A H KL NL+ ++D N++     TS+    +V + R +A+
Sbjct: 157 FCFLGDGCLQEGVSSEACSLAGHLKLSNLIAVWDNNKITIDGATSMSFDEDV-EKRFEAY 215

Query: 739 GLNSL-VVDGH-DVTELVKAFDEAASVTGKPTALVAXTYKGRG 861
           G N + V +G  D+  + K F EA S T KPT +   T  G G
Sbjct: 216 GWNIVRVANGDTDLDGIEKGFREAMSCTDKPTLINLKTTIGYG 258


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 608 DSQMLPSAASPSPTRQYXPVGRLVEVLPDVGHAGRHGEPLAQG 480
           DSQ+    A+PSP  ++ P G   ++   + H+G     LAQG
Sbjct: 194 DSQLPVPKAAPSPIEEWYPPGH-GDIFDALVHSGTIERLLAQG 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,695
Number of Sequences: 5004
Number of extensions: 53461
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)