Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_N08
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180... 71 1e-12
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 71 2e-12
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 36 0.032
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 35 0.075
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 29 4.9
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 29 4.9
05_01_0244 - 1825141-1825155,1825329-1825416,1825435-1825742,182... 29 6.5
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 28 8.6
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 28 8.6
>06_01_0237 -
1808203-1809159,1809246-1809399,1809488-1809636,
1809715-1809997,1810087-1810192,1810293-1810383,
1810779-1811270
Length = 743
Score = 70.9 bits (166), Expect = 1e-12
Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Frame = +3
Query: 153 LKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILS 332
L+ N +R +I A + SGHP A + +L+ MRY P + DRFILS
Sbjct: 84 LEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFILS 143
Query: 333 KGHAAPILYAAWAEAGLFPL--DELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGLAV 503
GH + YA AG + ++LK R+ S GHP V+V TG LGQG+A
Sbjct: 144 AGHGCMLQYALLHLAGYDAVLEEDLKQFRQWGSKTPGHPENFETPGVEVTTGPLGQGIAN 203
Query: 504 AAGMAYVGKY 533
A G+A K+
Sbjct: 204 AVGLALAEKH 213
Score = 54.4 bits (125), Expect = 1e-07
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Frame = +1
Query: 559 YCLVGDGEAAEGSIWESLHFASHYKLDNLVVIFDVNRLGQSEPTSLQHQLEVYDARLKAF 738
YC++GDG EG E+ A H+ L L+ +D N + T + +V AR +A
Sbjct: 231 YCILGDGCQMEGISNEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDV-SARFEAL 289
Query: 739 GLNSL-VVDGHD-VTELVKAFDEAASVTGKPTALVAXTYKGRG 861
G +++ V +G+D E+ A EA +VT KPT + T G G
Sbjct: 290 GWHTIWVKNGNDGYDEIRAAIKEAKAVTDKPTLIKVTTTIGFG 332
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 70.5 bits (165), Expect = 2e-12
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Frame = +3
Query: 147 EQLKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFI 326
E ++ N +R ++ + +KSGHP A + VLF +R+ P DRFI
Sbjct: 53 EVVEQSVNTIRFLAVDSVEKAKSGHPGLPMGCAPLGHVLFDEFLRFNPKNPYWFDRDRFI 112
Query: 327 LSKGHAAPILYAAWAEAGL--FPLDELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGL 497
LS GH + YA AG +D+LK R+ S GHP V+V TG LGQG
Sbjct: 113 LSAGHGCMLQYALLHLAGYDSVTMDDLKAFRQWGSRTPGHPENFETPGVEVTTGPLGQGF 172
Query: 498 AVAAGMAYVGKY 533
A A G+A K+
Sbjct: 173 ANAVGLALAEKH 184
Score = 41.5 bits (93), Expect = 9e-04
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = +1
Query: 559 YCLVGDGEAAEGSIWESLHFASHYKLDNLVVIFDVNRLGQSEPTSLQHQLEVYDARLKAF 738
Y ++GDG EG E+ A H+ L L+ +D N + T + + AR +A
Sbjct: 202 YVILGDGCQMEGVSNEASSLAGHWGLGKLIAFYDDNHISIDGSTGIAFTEDAL-ARYEAL 260
Query: 739 GLNSL-VVDGH-DVTELVKAFDEAASVTGKPTALVAXTYKGRG 861
G +++ V +G+ ++ A EA +V KPT + T G G
Sbjct: 261 GWHTIWVKNGNTGYDDIRAAIKEAKAVKDKPTLIKVTTTIGYG 303
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 36.3 bits (80), Expect = 0.032
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Frame = +1
Query: 571 GDGEAAEGSIWESLHFASHYKLDNLVVIFD-VNRLGQSEPTSLQHQLEVYDARLKAFGLN 747
GDG G +E L+ A +KL + V+ + + +G S + E+Y + AFG+
Sbjct: 223 GDGTCNNGQFFECLNMAQLWKLPIVFVVENNLWAIGMSHLRATSDP-EIYK-KGPAFGMP 280
Query: 748 SLVVDGHD---VTELVKAFDEAASVTGKPTALVAXTYKGRG 861
+ VDG D V E+ K E A PT + TY+ RG
Sbjct: 281 GVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 321
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 35.1 bits (77), Expect = 0.075
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 17/111 (15%)
Frame = +1
Query: 571 GDGEAAEGSIWESLHFASHYKLDNLVVIFDVNR-LGQSEPTSLQHQLEVYD--------- 720
GDG +EG +L+FA+ ++ V+ F N S PTS Q + ++Y+
Sbjct: 305 GDGGTSEGDFHAALNFAA--VMEAPVIFFCRNNGWAISTPTSEQFRSDLYNNLNSTAIAG 362
Query: 721 ----ARLKAFGLNSLVVDGHD---VTELVKAFDEAASVTGKPTALVAXTYK 852
R +A+G+ S+ VDG+D V V E A G+P + A TY+
Sbjct: 363 DGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVEALTYR 413
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 757 VDGHDVTELVKAFDEAASVTGKPTALV-AXTYKGRGF 864
VDGH V +LV F++ S+ LV T KG+G+
Sbjct: 324 VDGHSVDDLVAIFNKVKSMPAPGPVLVHIVTEKGKGY 360
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 436 ATPPRDSTSWTSAPAPW 486
A PPR SW +PAPW
Sbjct: 261 AFPPRRPNSWAPSPAPW 277
>05_01_0244 -
1825141-1825155,1825329-1825416,1825435-1825742,
1827084-1827128,1827198-1827614,1828345-1828818
Length = 448
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -2
Query: 590 SAASPSPTRQYXPVGRLVEVLPD-VGHAGRH 501
+AA+P+P Q+ P G LVEVLPD G+ G H
Sbjct: 16 AAAAPAPD-QFRP-GDLVEVLPDEPGYRGAH 44
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 222 PTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPILYAAWAEA 377
PT +MA + +RYKISA D R +L H P ++ + A
Sbjct: 30 PTRGGAMAAAGDKMSIRAVRYKISASVDDRGPRPVLPLAHGDPSVFPEFRTA 81
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -1
Query: 321 ICRRKRLVARRSCTALCGRREQTLSPPLTRMMSDDQTLR 205
+ R +R VAR++ ALC RR+++L +T++ D LR
Sbjct: 650 LARLQRGVARKALRALCTRRKKSLD-RITKLEKDRDYLR 687
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,413,084
Number of Sequences: 37544
Number of extensions: 435271
Number of successful extensions: 1589
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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