Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_N01
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   223   1e-60
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   223   1e-60
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   2.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  223 bits (546), Expect = 1e-60
 Identities = 114/173 (65%), Positives = 127/173 (73%), Gaps = 5/173 (2%)
 Frame = +1

Query: 358 IERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALN 537
           IERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQALN
Sbjct: 31  IERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALN 90

Query: 538 FAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTVL-----PP 702
           FAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLDFART L       
Sbjct: 91  FAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKA 150

Query: 703 MSVREMASVNSPVSETASARSSSPTV*SGLYRXFGVSVQGIIIYRASYFGFYD 861
              RE   + + +++   A        +GLYR FGVSVQGIIIYRA+YFGFYD
Sbjct: 151 GGEREFTGLGNCLTKIFKADGI-----TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 50.0 bits (114), Expect = 3e-08
 Identities = 22/26 (84%), Positives = 25/26 (96%)
 Frame = +3

Query: 267 MSNLADPVAFAKDFLAGGISAAVSKT 344
           MS LADPVAFAKDFLAGG++AA+SKT
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKT 26



 Score = 25.8 bits (54), Expect = 0.52
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 424 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 513
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  223 bits (546), Expect = 1e-60
 Identities = 114/173 (65%), Positives = 127/173 (73%), Gaps = 5/173 (2%)
 Frame = +1

Query: 358 IERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALN 537
           IERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQALN
Sbjct: 31  IERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALN 90

Query: 538 FAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTVL-----PP 702
           FAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLDFART L       
Sbjct: 91  FAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKA 150

Query: 703 MSVREMASVNSPVSETASARSSSPTV*SGLYRXFGVSVQGIIIYRASYFGFYD 861
              RE   + + +++   A        +GLYR FGVSVQGIIIYRA+YFGFYD
Sbjct: 151 GGEREFTGLGNCLTKIFKADGI-----TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 50.0 bits (114), Expect = 3e-08
 Identities = 22/26 (84%), Positives = 25/26 (96%)
 Frame = +3

Query: 267 MSNLADPVAFAKDFLAGGISAAVSKT 344
           MS LADPVAFAKDFLAGG++AA+SKT
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKT 26



 Score = 25.8 bits (54), Expect = 0.52
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 424 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 513
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 309 LAGGISAAVSKTAXSTHRACQAAAPSTARQQADRRRPALQGYRRRLR 449
           + GGI   + + A   H+  +      AR  AD+ R A++  R+ LR
Sbjct: 834 IIGGIGLIIIEVAYKKHQIRKQKKMELARHAADKWRGAIE-KRKTLR 879


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 13/57 (22%), Positives = 21/57 (36%)
 Frame = +1

Query: 673 LDFARTVLPPMSVREMASVNSPVSETASARSSSPTV*SGLYRXFGVSVQGIIIYRAS 843
           +D+A T         +  +   +S        +PT  S   R F     GI++Y  S
Sbjct: 464 VDYADTGAYMCQASSIGGITRDISSLVVQEQPTPTTESEERRFFSFHQWGILVYEPS 520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,432
Number of Sequences: 438
Number of extensions: 5060
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)