Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_M19
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 33 0.29
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 33 0.39
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382... 31 1.6
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787... 31 1.6
12_02_1249 - 27331801-27331896,27331984-27332072,27334020-273340... 30 2.1
03_05_0698 - 26911693-26911788,26911874-26911933 30 2.7
03_05_0224 - 22099472-22099813,22100496-22101032 29 3.6
02_05_0761 - 31550936-31551020,31551641-31552666,31553083-315531... 29 6.3
01_05_0296 + 20567259-20567386,20568895-20569123,20569205-205694... 29 6.3
01_05_0295 + 20537147-20537291,20539111-20539283,20539365-205395... 29 6.3
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 28 8.3
>03_01_0261 -
2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 33.1 bits (72), Expect = 0.29
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +2
Query: 524 VGALTMGMTFLLSPLSGVLTGIVGIRLTAVLGGTIAALGLIVSSFVVDNINALYFTYSIM 703
VG + T L P+S VL G+VG +LT L + A L+++ + + + +
Sbjct: 313 VGGIEAEATMLGQPMSMVLPGVVGFKLTGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEF 372
Query: 704 YGLGAS 721
YG G S
Sbjct: 373 YGGGMS 378
>08_01_0606 -
5321751-5321819,5321950-5322192,5322279-5322377,
5322463-5322942,5323069-5323167,5323306-5323427,
5323517-5323635,5323734-5323801,5323889-5324074,
5324169-5324244,5324339-5324418,5324505-5324561,
5324980-5325122,5325208-5325352,5325652-5325813,
5325893-5326078,5326263-5326355,5326437-5326597,
5327005-5327109,5328263-5328278
Length = 902
Score = 32.7 bits (71), Expect = 0.39
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 524 VGALTMGMTFLLSPLSGVLTGIVGIRLTAVLGGTIAALGLIVS 652
VG + T L P+S VL G+VG +LT L + A L+++
Sbjct: 229 VGGIEAEATMLGQPMSMVLPGVVGFKLTGKLQNGVTATDLVLT 271
>04_04_1183 -
31537196-31537290,31537665-31537986,31538176-31538277,
31538826-31539071,31539385-31539506,31539588-31540344,
31540447-31540770,31540872-31541052,31541208-31541602,
31541877-31541942,31542225-31542377,31542593-31542691,
31542776-31542982,31543432-31543572,31543852-31544019,
31544302-31544395,31544479-31544585,31545140-31545274,
31545549-31545656,31545975-31546049,31546197-31546262,
31546500-31546556,31546678-31546702,31546809-31546889,
31546966-31547080,31547211-31547370,31547444-31547483,
31547599-31547780,31547905-31548234
Length = 1650
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 509 SRAALVGALTMGMTFLLSPLSGVLTGIVGIRLTAVLGGTIA---ALGLIVSSFVVDNI 673
S A+VG+ G T L+S + G + + G + VL GT+A + I ++ V DNI
Sbjct: 645 SLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNI 702
>01_06_0451 -
29476892-29477516,29477600-29477843,29478313-29478714,
29481164-29481358,29481418-29481537,29481615-29481683,
29481901-29481999,29483857-29483946,29484049-29484180,
29485062-29485173
Length = 695
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 669 LSTTNEDTIKPSAAMVPPNTAVKRIPTIPVSTPDKGDNKNVIPI 538
L TT+ P PP A K P PV P KG + + +P+
Sbjct: 118 LPTTSPPVFPPPIRSYPPLPANKPYPNSPVVAPPKGRHHHSLPV 161
>12_02_1249 -
27331801-27331896,27331984-27332072,27334020-27334083,
27334208-27334336,27334554-27334607,27334712-27334741
Length = 153
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 310 KEQGRY*R*C*SGRSPRAS*WWF 378
++ RY R C +GRSP+ + WWF
Sbjct: 126 QDNDRYVRNCRNGRSPKETRWWF 148
>03_05_0698 - 26911693-26911788,26911874-26911933
Length = 51
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 313 EQGRY*R*C*SGRSPRAS*WWF 378
+ RY R C +GRSP+ + WWF
Sbjct: 25 DNDRYVRNCRNGRSPKETRWWF 46
>03_05_0224 - 22099472-22099813,22100496-22101032
Length = 292
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 511 PCCSGWCLDYGYDVFVVAFVWSADRNSGNTLDGCIRR 621
PC GWC YG A + G DG RR
Sbjct: 64 PCAGGWCHSYGDGAAAAAVAGAGGGGGGGKKDGGGRR 100
>02_05_0761 -
31550936-31551020,31551641-31552666,31553083-31553117,
31554921-31555039,31555215-31555331,31556131-31556205,
31556885-31557017
Length = 529
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 197 KILGHVHELVISIYNRIN*NYFMKMNLDPKENSDLLQERSKVDTNGNANQEEVREPPD 370
+I + + VI N + NY P ++++L + V T GN + V+ PD
Sbjct: 169 RIATRIPQRVICASNSYSSNYRSTSTSSPMNSNEMLGAQETVSTEGNNSCSSVQSTPD 226
>01_05_0296 +
20567259-20567386,20568895-20569123,20569205-20569436,
20569583-20569701,20570321-20570377,20570455-20570639,
20571416-20571560,20571630-20571713,20571798-20571861,
20571889-20571932
Length = 428
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 570 DKGDNKNVIPIVKAPTRAARLSSFVAPCSFNIISRTGYTTLQEFIT 433
D D V+ VK+ +RAA L+ + C+F IS T +E +T
Sbjct: 274 DALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLT 319
>01_05_0295 +
20537147-20537291,20539111-20539283,20539365-20539596,
20539743-20539861,20540480-20540536,20540615-20540799,
20542252-20542396,20542463-20542546,20542634-20542697,
20542799-20542809
Length = 404
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 570 DKGDNKNVIPIVKAPTRAARLSSFVAPCSFNIISRTGYTTLQEFIT 433
D D V+ VK+ +RAA L+ + C+F IS T +E +T
Sbjct: 261 DALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLT 306
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 735 GV*AKDAPRPYIILYVK*RAL--MLSTTNEDTIKPSAAMVPPNTAVKRIPTIPVSTPDKG 562
GV +++ RP + L + RA L T+ I PS PN+A +P P ST K
Sbjct: 28 GVSCQNSRRPNLSLQIPNRAFDDTLPTSTRIKISPS-----PNSARSGLPPRPNSTRTKS 82
Query: 561 DNKNVIP 541
+ +IP
Sbjct: 83 SIRGIIP 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,552,853
Number of Sequences: 37544
Number of extensions: 386415
Number of successful extensions: 981
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -