Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_M19
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          27   0.22 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.68 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.3  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 736 RGISKRCSQTIHNTICKIESIDV---VNNERRYN 644
           RG  +RC+ T+H T+   +  D+   VNN  R N
Sbjct: 99  RGNEQRCTVTMHGTVQSYDKYDLLENVNNAARIN 132


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 639 PSAAMVPPNTAVKRIPTIPV 580
           PSA  VP NT  + IP IP+
Sbjct: 768 PSAQNVPQNTNSQAIPRIPI 787


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -2

Query: 669 LSTTNEDTIKPSAAMVPPNTAVKRIPTIPVSTPDKGDNKNV 547
           ++TT   T   +     PNT      T P    D+ D+K +
Sbjct: 661 ITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDDKEL 701


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 16/74 (21%), Positives = 28/74 (37%)
 Frame = +1

Query: 508 EPCCSGWCLDYGYDVFVVAFVWSADRNSGNTLDGCIRRNHRRTWFNCIFVRC*QHQCSLF 687
           +P CS       Y+   + +VW  D       +G +R++   T  N   ++     C + 
Sbjct: 197 DPLCSFAIESISYEQTAITYVWKND-------EGTLRKSPSLTSLNAYLIKNQTITCPI- 248

Query: 688 YI*YYVWSGSIFCL 729
                 W G+  CL
Sbjct: 249 ---KVSWRGNYSCL 259


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 16/74 (21%), Positives = 28/74 (37%)
 Frame = +1

Query: 508 EPCCSGWCLDYGYDVFVVAFVWSADRNSGNTLDGCIRRNHRRTWFNCIFVRC*QHQCSLF 687
           +P CS       Y+   + +VW  D       +G +R++   T  N   ++     C + 
Sbjct: 248 DPLCSFAIESISYEQTAITYVWKND-------EGTLRKSPSLTSLNAYLIKNQTITCPI- 299

Query: 688 YI*YYVWSGSIFCL 729
                 W G+  CL
Sbjct: 300 ---KVSWRGNYSCL 310


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 16/74 (21%), Positives = 28/74 (37%)
 Frame = +1

Query: 508 EPCCSGWCLDYGYDVFVVAFVWSADRNSGNTLDGCIRRNHRRTWFNCIFVRC*QHQCSLF 687
           +P CS       Y+   + +VW  D       +G +R++   T  N   ++     C + 
Sbjct: 197 DPLCSFAIESISYEQTAITYVWKND-------EGTLRKSPSLTSLNAYLIKNQTITCPI- 248

Query: 688 YI*YYVWSGSIFCL 729
                 W G+  CL
Sbjct: 249 ---KVSWRGNYSCL 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,094
Number of Sequences: 438
Number of extensions: 4678
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)