Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_M13
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 847 PPPPPXPXXXGGXXPXXXGGGGXPPP 770
           PPPPP      G  P    G   PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPP 363


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 26/102 (25%), Positives = 27/102 (26%)
 Frame = +3

Query: 399  PPKTPPXXPXKXXXXXXKKXPPXKXKFPPKXXXGXXXGXESPPXFXSPRXXXPPSXKXXX 578
            PP  PP  P           PP     PP           SP    +P    PP  K   
Sbjct: 966  PPSIPPPLPVSNILSSPTSEPPKDH--PPSAPLSKPVST-SPA---APLARVPPVPKLSS 1019

Query: 579  KKXXGXXFXPPPGGXPPXXXPXXXPPXXXGGGXPPXXKKXPG 704
            K         P    PP   P   PP       PP  K   G
Sbjct: 1020 K---APPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSG 1058


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 773 GGXPPPPPRXGXXPP 817
           G  PPPPP  G  PP
Sbjct: 7   GNPPPPPPPPGFEPP 21


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 27/88 (30%), Positives = 28/88 (31%)
 Frame = -2

Query: 640 GXXXGGXPPGGGXXXXPXFFXXXFXXEGGXXXRGEXXXGGDSXPXXXPXXILGGNXXXKG 461
           G   GG PPG G       F       GG    G    G +  P        GG     G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP--------GGFGGGPG 245

Query: 460 GXFFXXXXXFFXGXXGGVXGGXPXXXGG 377
           G  F      F G  GG  GG P   GG
Sbjct: 246 G--FGGGLGGFGGGPGG-FGGGPGGHGG 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.148    0.523 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,440
Number of Sequences: 5004
Number of extensions: 24066
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)