Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_M09
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    31   0.29 
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    27   3.6  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.7  
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.2  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   8.2  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    26   8.2  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   8.2  

>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 556 ELTVRFKYVNSDTNDGDLYKCGFDYKDSWITVPESDDKYEPNIDVRFALQNAE 714
           +L V+F + N     G + +    Y D  IT+P+ + K +PN+   + +  A+
Sbjct: 161 DLLVQFLFENEVNGSGIIIRLLNQYIDIKITMPQVEGKEDPNVQAVYEMDEAK 213


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 607 LYKCGFDYKDSWITVPESDDKYEP-NIDVRFALQNAEVNNKINDYFKNTTTPQPDLDTNH 783
           L+    D +D  ++  ++ +  +P +I  +   ++ EV+N  +    N+T   PD+D   
Sbjct: 419 LFYTAADEEDDDVSEVDTKESIKPMSIPSQLKQESVEVSNLSSTPRSNSTITYPDMDPMV 478

Query: 784 LDTKEQVKQKTL 819
                Q   KTL
Sbjct: 479 ASFSSQYSHKTL 490


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 532 GHWEYEDNELTVRFKYVNSDTNDGDLYKCGFDYKDSWITVPESDDKYEPNIDVRFALQNA 711
           G + Y   E+     +VN+    GD  + G   ++ WI   E  DKYE  ++ +  +   
Sbjct: 253 GGYAYGSTEIGGDAVWVNAVRQGGDPLQ-GISPQERWIDKKEEYDKYEWELEQKSTMDED 311

Query: 712 E 714
           E
Sbjct: 312 E 312


>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 125

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = +2

Query: 413 LMISSSKANTDMCT*PRADHRQRSPTRRSRGCLNWST*VKVTGNTRTTN*QSVLNM*TLI 592
           L ISS K NT M    R+  ++ +  +RSR    + T        R    +SV  + ++ 
Sbjct: 40  LCISSEKLNTPMHNRSRSGIKKHTSVKRSRSFKLFDTLFFGILRLRKQRIRSVKKVRSIS 99

Query: 593 RMTAISTNAALITKTL 640
               IST +AL   T+
Sbjct: 100 SPVLISTTSALALATI 115


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 688 VRFALQNAEVNNKINDYFKNTTTPQPDLDTNHLDTKEQ 801
           + +A+Q   VN K ND+  + T   P L T     KE+
Sbjct: 117 ITWAMQETIVNEKRNDFLFDATAYMPLLGTLPSSAKEE 154


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
 Frame = -3

Query: 235 RGVLTTCPFCSRVYHHD----GTCWAS 167
           RGV T  PF  R+  HD    G CW +
Sbjct: 451 RGVKTNIPFVLRLLMHDTFIQGNCWTT 477


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 127 ACCHHGRSHKCRHERPSKCRHGGKLGC 207
           +CC   +   C  E+PS C +G    C
Sbjct: 270 SCCSQEKKSCCTSEKPSCCSNGKSTVC 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,423,945
Number of Sequences: 5004
Number of extensions: 71107
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)